View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17139_low_13 (Length: 227)
Name: NF17139_low_13
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17139_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 24518348 - 24518156
Alignment:
| Q |
17 |
aatataagacttaaaatagtcccacacaatcccctcacaagaaccaagattcttccacaaatcaattggaagaaaaaatggaaactcccatatagagaaa |
116 |
Q |
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| T |
24518348 |
aatataagacttaaattagtcccacacaatcctctcacaagaaccaagattcttccacaaatcaattggaagaaaaaatggaaactcccatatagagaaa |
24518249 |
T |
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| Q |
117 |
atttcacctactaaaatcaaggaatgagagaaaacaataacattttgagcccgcaaaatggtactaaaaactaccacgtccacaagtgattct |
209 |
Q |
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| T |
24518248 |
atttcacctactaaaatcaaggaatgagagaaaacaataacattttgagcccgcaaaatggtactaaaaactaccatgtccacaagtgattct |
24518156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 24507314 - 24507177
Alignment:
| Q |
56 |
agaaccaagattcttccacaaatcaattggaagaaaaaa-tggaaactcccatatagagaaaatttcacctactaaaatcaaggaatgagagaaaacaat |
154 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || |
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| T |
24507314 |
agaaccaagattcttccacaaatcaattggaaaaaaaaaatggaaactcccatatagagaaaatttcatcaactaaaatcaaggaatgagagaaaac-at |
24507216 |
T |
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| Q |
155 |
aacattttgagcccgcaaaatggtactaaaaactaccac |
193 |
Q |
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| T |
24507215 |
aacattttgagcacgcaaaatagtattaaaaactaccac |
24507177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 24507460 - 24507421
Alignment:
| Q |
20 |
ataagacttaaaatagtcccacacaatcccctcacaagaa |
59 |
Q |
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|||||| |||||||||||| |||||||||||||||||||| |
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| T |
24507460 |
ataagagttaaaatagtcctacacaatcccctcacaagaa |
24507421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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