View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17139_low_14 (Length: 220)
Name: NF17139_low_14
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17139_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 53677484 - 53677293
Alignment:
| Q |
11 |
gcagagaagaaatggagagaagtaggtagtgtatttagattctcatctactactacaagcgcttcttttgtactaagaaaacactatttgaatcttcttt |
110 |
Q |
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| T |
53677484 |
gcagagaagaaatggagagaagtaggtagtgtatttagattctcatctactactacaagcgcttcttttgtactaagaaaacactatttgaatcttcttt |
53677385 |
T |
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| Q |
111 |
atcattacgaacaagttcacttcttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactatttttatttcattta |
202 |
Q |
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| T |
53677384 |
atcattacgaacaagttcacttcttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactatttttatttcattta |
53677293 |
T |
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