View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17139_low_15 (Length: 219)

Name: NF17139_low_15
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17139_low_15
NF17139_low_15
[»] chr2 (2 HSPs)
chr2 (18-205)||(45199601-45199788)
chr2 (19-205)||(21982694-21982880)
[»] chr4 (1 HSPs)
chr4 (19-205)||(48439161-48439347)
[»] chr8 (1 HSPs)
chr8 (28-114)||(26787999-26788085)
[»] chr1 (2 HSPs)
chr1 (28-129)||(1498805-1498906)
chr1 (28-114)||(1460430-1460516)
[»] chr3 (1 HSPs)
chr3 (18-113)||(50274237-50274332)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 45199788 - 45199601
Alignment:
Q  18 agatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45199788 agatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttg 45199689  T
Q  118 gacggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45199688 gacggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg 45199601  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 21982880 - 21982694
Alignment:
Q  19 gatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttgg 118  Q
    |||||||  |||| |||||||||||| |  || ||||| || |||||| | ||||| ||||| || |||||||| || ||||| || || ||||||||||    
T  21982880 gatggaaaatggagtgagcaagaggcagaaattttggtgccgggagatgtgatcagtatcaagttgggagacattgtcccagctgatgcccgtcttttgg 21982781  T
Q  119 acggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg 205  Q
    | ||||||||  | |||||||| || ||||| || ||||||||||||||||||  ||| | |||||||||| | || ||||||||||    
T  21982780 aaggagatcccttaaagattgaccagtctgcccttactggtgagtccttgccagtaacaaggaaccctggtcaagaggtcttctctg 21982694  T

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Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 48439347 - 48439161
Alignment:
Q  19 gatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttgg 118  Q
    |||||||  |||||||| |||||||| || || || || ||||||||| || | ||||| ||  | |||||||| || ||||| || ||||| || ||||    
T  48439347 gatggaaaatggactgaacaagaggcggcaattttagtgccaggagatttagtgagcataaagctgggagacattgtcccagctgatgctcgcctcttgg 48439248  T
Q  119 acggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg 205  Q
    | |||||| | ||||||||||| |||||||||||||||||||||||  | |||   |||||||||||||||||||||||||||||||    
T  48439247 aaggagatgcccttaagattgaccaatctgcactcactggtgagtcacttccagttaccaagaaccctggtgatgaagtcttctctg 48439161  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 26787999 - 26788085
Alignment:
Q  28 tggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtctt 114  Q
    |||| ||||||||| ||||| || || ||||||||||| || ||||||||||| |||||||||||| | ||||||||||||||||||    
T  26787999 tggagtgagcaagatgctgcaattttagtaccaggagacattatcagcatcaagttaggagacatcatcccagccgacgctcgtctt 26788085  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 1498906 - 1498805
Alignment:
Q  28 tggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttggacggagatc 127  Q
    |||| ||| ||||| ||||| || || ||||||||||| |||||||||||||| |||||||| || |||||||| || || |||||| | || |||||||    
T  1498906 tggagtgaacaagatgctgcaattttagtaccaggagacataatcagcatcaagttaggagatattgttccagctgatgcgcgtcttcttgagggagatc 1498807  T
Q  128 ct 129  Q
    ||    
T  1498806 ct 1498805  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 1460430 - 1460516
Alignment:
Q  28 tggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtctt 114  Q
    |||| ||| ||||| ||||| || || ||||||||||| ||||||||||| || |||||||||||| | ||||| || || ||||||    
T  1460430 tggagtgaacaagatgctgcaattttagtaccaggagacataatcagcattaagttaggagacatcatcccagctgatgcgcgtctt 1460516  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 50274237 - 50274332
Alignment:
Q  18 agatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtct 113  Q
    |||||| |||||| ||||  |||| ||||| || ||||| ||||| ||||| |||||||| ||||||||||| ||| |||| || || ||||||||    
T  50274237 agatggtaggtggtctgaagaagatgctgcaattttggtcccaggtgatatcatcagcattaaattaggagatatcattcctgctgatgctcgtct 50274332  T

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