View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17139_low_3 (Length: 455)
Name: NF17139_low_3
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17139_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 3589851 - 3590265
Alignment:
| Q |
20 |
tattggatatatatgttcaacacaaatgaatttgttttttaagaacacaaatgaatgttggatattaagtgtatacttttctactagtttttacataaat |
119 |
Q |
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| T |
3589851 |
tattggatatatatattcaacacaaatgaattt-ttttttaggaacacaaatgaatgttggatattaagtgtatacttttctactagtttttacataaat |
3589949 |
T |
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| Q |
120 |
ataaaattcgatatattattgatgtgtgtcaagatcaagattcaaacaatcttattataagatattactttattattaatttctttatttgaggtgaata |
219 |
Q |
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| T |
3589950 |
ataaaattcgatatattattgatgtgtgtcaagatcaagattcaaacaatcttattataagatattactttattattaatttctttatttgaggtgaata |
3590049 |
T |
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| Q |
220 |
agggttgataagaattactagttttaatttcgataaaaacatgtcaatttaaaacaacttatcaacatgaaacgattttcgcaagaattcccttgtgtta |
319 |
Q |
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| T |
3590050 |
agggttgataagaattactagttttaatttcgataaaaacatgtcaatttaaaacaacttatcaacatgaaacgattttcgcaagaattcccttgtgtta |
3590149 |
T |
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| Q |
320 |
tttattaaagaattctcctgttttaaggtttcaaaaattaaacttttttgactcatggttttctannnnnnnatttgcaggatttcatatttgactaagg |
419 |
Q |
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| T |
3590150 |
tttattaaagaattctcctgttttaaggtttcaaagattcaacttatttgactcatggttttctattttttaatttgcaggatttcatatttgactaagg |
3590249 |
T |
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| Q |
420 |
tggttgtgagtacctt |
435 |
Q |
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| T |
3590250 |
tggttgtgagtacctt |
3590265 |
T |
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