View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17139_low_4 (Length: 356)
Name: NF17139_low_4
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17139_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 38532822 - 38532488
Alignment:
| Q |
1 |
aaaagggaagaaatcaagattcattttgttgtacatgtggtcatggatctcttttttatatgcatgctatgaaaattaattatttttaatttaattgaaa |
100 |
Q |
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| T |
38532822 |
aaaagggaagaaatcaagattcattttgttgtacatgtggtcatggatctcttttttatatgcatgctatgaaaattaattatttttaatttaattgaaa |
38532723 |
T |
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| Q |
101 |
gacaaaatttaaatgtgcttcagattctcaaatatattagactatgtagttgtgtacaaatgatattttgggataggaaacaaataaaaacttgttgaaa |
200 |
Q |
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| T |
38532722 |
gacaaaatttaaatgtgcttcagattctcaaatatattagactatgtagttgtgtacaaatgatattttgggatagtaaacaaataaaaacttgttgaaa |
38532623 |
T |
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| Q |
201 |
agcttctgttggaacat---aacagcttctgtatggacaacttggttgtttgaaacggtaatcatggccaaggagaagacatgttcttacttgatcaaag |
297 |
Q |
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| T |
38532622 |
agcttctgttggaacataacaacagcttctgtatggacaacttggttggttgaaacggtaatcatggccaaggagaagacatgttcttacttgatcaaag |
38532523 |
T |
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| Q |
298 |
tccgttgtagaaatactcgttgtgatattggtctg |
332 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
38532522 |
tccgttgtagaaatactcgttgtgatattgatctg |
38532488 |
T |
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