View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17139_low_5 (Length: 356)
Name: NF17139_low_5
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17139_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 41542474 - 41542146
Alignment:
| Q |
18 |
atacaaagatcagaagtgtttgtgcgcttcatagatcagaaatgtccgtgattcagagataattgttgacaatcaatacaagatcaacaatattaaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41542474 |
atacaaagatcagaagtgtttgtgcgcttcatagatcagaaatgtccgtgatacagagataattgttgacaatcaatacaagatcaacaatattaaaaga |
41542375 |
T |
|
| Q |
118 |
gtattgctatccatatgatccatcatgtctcgaaattctgactactcacctaaaaagacagatggatgcatgtaataaatgtctctttttgaactatgtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41542374 |
gtattgctatccatatgatccatcatgtctcgaaattctgactactcgcctaaaaagacagatggatgcatgtaataaatgtctctttttgaactatgtt |
41542275 |
T |
|
| Q |
218 |
tgttctcaaatcctaatttgaacagtaataatataattaaagaacaagcacacattgatgaaagtaaaagatagagtgaatgacctaatctatgaacacg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41542274 |
tgttctcaaatcctaatttgaacagtaataatataattaaagaacaagcacacattgatgaaagtaaaagatagagtgaatgacctaatctatgaacacg |
41542175 |
T |
|
| Q |
318 |
tgtttccttgaaaagtgttagaacttcat |
346 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
41542174 |
tgtttccttgcaaagtgttagaacttcat |
41542146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 41558536 - 41558395
Alignment:
| Q |
83 |
ttgacaatcaatacaagatcaacaatattaaaagagtattgctatccatatgatccatcatgtctcgaaattctgactactcacctaaaaagacagatgg |
182 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
41558536 |
ttgaaaatcaatacaagatcaactatactaaaagagtgttagtatccatatgatccatcatgttgcgaaattctgatgactcacccaaaaagacagatgg |
41558437 |
T |
|
| Q |
183 |
atgcatgtaataaatgtctctttttgaactatgtttgttctc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41558436 |
atgcatgtaataaatgtctctttttgaactatgtttgttctc |
41558395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 41557992 - 41557912
Alignment:
| Q |
267 |
acacattgatgaaagta---aaagatagagtgaatgacctaatctatgaacacgtgtttccttgaaaagtgttagaacttc |
344 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||||||||| ||||| | ||||||||| |||||||||||||||| |
|
|
| T |
41557992 |
acacattgatgaaaatataaaaagatagagtgagtgacctaatctgcgaacatgggtttccttgcaaagtgttagaacttc |
41557912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University