View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17139_low_7 (Length: 304)
Name: NF17139_low_7
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17139_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 70 - 259
Target Start/End: Complemental strand, 26185422 - 26185232
Alignment:
| Q |
70 |
aaggctaaattttttcttgacagtatcctctaatcatatcttgcagatgtttgttgaaataatttactataaagtaatataacaacgtaacatagtaatt |
169 |
Q |
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| T |
26185422 |
aaggctaaattttttcttgacagtatcctctaatcatatcttgcagatgtttgttgaaataatttactataaagtaatataacaacgtaacatagtaatt |
26185323 |
T |
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| Q |
170 |
aatgagatattttatgaaaaacataataatctaccacaaccgtttaag-tataatttaaattggtcccattgaagcatacacgtccttatt |
259 |
Q |
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| T |
26185322 |
aatgagatattttatgaaaaacataataatctaccacaaccgtttaagttataatttaaattggtcccattgaagcatacacgtccttatt |
26185232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26185459 - 26185415
Alignment:
| Q |
1 |
attagaacatgatatgaaataaaaagataaaaaatgcaaggctaa |
45 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26185459 |
attaaaacatgatatgaaataaaaagataaaaaatgcaaggctaa |
26185415 |
T |
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