View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1713_high_2 (Length: 264)
Name: NF1713_high_2
Description: NF1713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1713_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4387660 - 4387436
Alignment:
| Q |
1 |
tccaaaattaagggcgaaattttgatactctctacatcctagtatgagtgtcacatgttattgatttataaaaactaatgagaaattataatgaaagnnn |
100 |
Q |
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| T |
4387660 |
tccaaaattaagggcgaaattttgatactctctacatcctagtatgagtgtcacatgttattgatttataaaaactaatgagaaattataatgaaagaaa |
4387561 |
T |
|
| Q |
101 |
nnnncaattttaccaaattagtctaattatgtctgtgcactcactcctataaatgcaaaattatattcataatagaatgataggagaattatgatataat |
200 |
Q |
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| T |
4387560 |
aaaacaattttaccaaattagtc-----------gtgcattcactcctataaatgcaaaattatattcataatagaatgataggagaattatgatataat |
4387472 |
T |
|
| Q |
201 |
ttcttttataatgaatcaaaagcgttagtactttct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4387471 |
ttcttttataatgaatcaaaagcgttagtactttct |
4387436 |
T |
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