View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1713_low_3 (Length: 340)
Name: NF1713_low_3
Description: NF1713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1713_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 128 - 340
Target Start/End: Complemental strand, 4387966 - 4387754
Alignment:
| Q |
128 |
atttgaaaattgtattcacaaaaaattaaacctcatttgaaaattgaacaagaagagggaaaaaataatgtccaattagaagatgaagaatctctctatt |
227 |
Q |
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| T |
4387966 |
atttgaaaattgtattcacaaaaaattaaacctcatttgaaaattgaacaagaagagggaaaaaataatgtccaattagaagatgaagaatctctctatt |
4387867 |
T |
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| Q |
228 |
gttaattcattcgatgcctttgctaacataaagttatcatgctaattgattaacatacgtcaactaatacctagtatgtttggtttttatttggtagagc |
327 |
Q |
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| T |
4387866 |
gttaattcattcgatgcctttgctaacataaagttatcatgctaattgattaacatacgtcaactaatacctagtatgtttggtttttatttggtagagc |
4387767 |
T |
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| Q |
328 |
tcctaagtgtccc |
340 |
Q |
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| T |
4387766 |
tcctaagtgtccc |
4387754 |
T |
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