View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1713_low_8 (Length: 213)

Name: NF1713_low_8
Description: NF1713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1713_low_8
NF1713_low_8
[»] scaffold0177 (2 HSPs)
scaffold0177 (1-140)||(18600-18739)
scaffold0177 (1-58)||(18558-18615)
[»] chr4 (1 HSPs)
chr4 (44-140)||(15473391-15473487)
[»] scaffold0422 (1 HSPs)
scaffold0422 (48-140)||(13559-13651)
[»] chr8 (1 HSPs)
chr8 (2-140)||(21290192-21290315)
[»] chr1 (4 HSPs)
chr1 (48-140)||(19168499-19168591)
chr1 (15-54)||(19168481-19168520)
chr1 (34-140)||(20881960-20882066)
chr1 (104-140)||(23068784-23068820)
[»] scaffold1078 (1 HSPs)
scaffold1078 (2-140)||(2568-2691)
[»] scaffold0007 (1 HSPs)
scaffold0007 (34-140)||(57417-57523)
[»] chr6 (3 HSPs)
chr6 (107-140)||(11237488-11237521)
chr6 (104-140)||(19285415-19285451)
chr6 (112-140)||(18544948-18544976)
[»] scaffold0752 (1 HSPs)
scaffold0752 (104-140)||(3844-3880)
[»] scaffold0414 (1 HSPs)
scaffold0414 (106-140)||(5372-5406)
[»] scaffold0080 (1 HSPs)
scaffold0080 (34-140)||(1195-1301)
[»] scaffold0537 (1 HSPs)
scaffold0537 (111-140)||(2904-2933)
[»] chr3 (4 HSPs)
chr3 (26-59)||(17008141-17008174)
chr3 (26-59)||(17018947-17018980)
chr3 (57-137)||(17008078-17008158)
chr3 (57-137)||(17018884-17018964)


Alignment Details
Target: scaffold0177 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 18600 - 18739
Alignment:
Q  1 cgttcctgaacacacttctgaacaaaacccctatgaacaatctgttcctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaacc 100  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| ||  |||||||||||||||||||| | ||||||||||||||    
T  18600 cgttcctgaacacacttctgaacgaaacccctctgaataatctgttcctgaacacactatttctgaacaaattgcttatgagcgacccacctcagaaacc 18699  T
Q  101 ttgtctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    || |||||||||||||||||||||||||||||||||||||    
T  18700 ttatctgaatcagaacctatgatctcatcagatgtctctg 18739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 18558 - 18615
Alignment:
Q  1 cgttcctgaacacacttctgaacaaaacccctatgaacaatctgttcctgaacacact 58  Q
    |||||||||||||||||||||||||||||||| |||||||   |||||||||||||||    
T  18558 cgttcctgaacacacttctgaacaaaacccctctgaacaagtcgttcctgaacacact 18615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 15473391 - 15473487
Alignment:
Q  44 gttcctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaaccttgtctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    ||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  15473391 gttcctgaacacactattcctgaacaaattgcttctgagcaacccacctcagaaaccttatctgaatcagaacctatgatcacatcagatgtctctg 15473487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 13651 - 13559
Alignment:
Q  48 ctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaaccttgtctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    |||||||  |||||| ||||||||||| |||||||||| | |||| ||||||| | |||||||||||||||||||||||||||||||||||||    
T  13651 ctgaacaatctgttcctgaacaaattgtttatgagcaaccaaccttagaaaccctatctgaatcagaacctatgatctcatcagatgtctctg 13559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 21290315 - 21290192
Alignment:
Q  2 gttcctgaacacacttctgaacaaaacccctatgaacaatctgttcctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaacct 101  Q
    ||||||||||||||||||||||||||||||| ||||||||||               ||||||||||||||||||| ||||||| |||||| || |||||    
T  21290315 gttcctgaacacacttctgaacaaaacccctctgaacaatct---------------gttcttgaacaaattgcttctgagcaacccaccttaggaacct 21290231  T
Q  102 tgtctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    | ||||||||| ||||||||||| |||||||||||||||    
T  21290230 tatctgaatcataacctatgatcacatcagatgtctctg 21290192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 19168499 - 19168591
Alignment:
Q  48 ctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaaccttgtctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    |||||||  |||||| ||||||||||| || ||||||| | |||  ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  19168499 ctgaacaatctgttcctgaacaaattgtttctgagcaaccaaccctagaaaccttatctcaatcagaacctatgatctcatcagatgtctctg 19168591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 19168481 - 19168520
Alignment:
Q  15 cttctgaacaaaacccctatgaacaatctgttcctgaaca 54  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  19168481 cttctgaacaaaacccctctgaacaatctgttcctgaaca 19168520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 20881960 - 20882066
Alignment:
Q  34 tgaacaatctgttcctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaaccttgtctgaatcagaacctatgatctcatcagat 133  Q
    |||||||| ||||| |||||   |||||| |||||||| || || ||||||| | ||||   |||||   || ||| |||||||||||||||||||||||    
T  20881960 tgaacaatttgttcttgaactatctgttcctgaacaaactgtttctgagcaacctacctttcaaacccaatcagaaccagaacctatgatctcatcagat 20882059  T
Q  134 gtctctg 140  Q
    |||||||    
T  20882060 gtctctg 20882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 23068820 - 23068784
Alignment:
Q  104 tctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  23068820 tctgaaccagaaccaatgatctcatcagatgtctctg 23068784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1078 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold1078
Description:

Target: scaffold1078; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 2568 - 2691
Alignment:
Q  2 gttcctgaacacacttctgaacaaaacccctatgaacaatctgttcctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaacct 101  Q
    |||||||||| |||||||||||||||||||| |||||||||| |||||||||| |||||               || ||||||| | |||  | ||||||    
T  2568 gttcctgaactcacttctgaacaaaacccctctgaacaatctattcctgaacaaactgt---------------ttctgagcaaccaaccctaaaaacct 2652  T
Q  102 tgtctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    | |||||||||||||||||||||||||||||||||||||    
T  2653 tatctgaatcagaacctatgatctcatcagatgtctctg 2691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 57417 - 57523
Alignment:
Q  34 tgaacaatctgttcctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaaccttgtctgaatcagaacctatgatctcatcagat 133  Q
    |||||||| |||||||||||   ||||||||||| ||| || || ||||||| | |||   ||||||   || ||| |||||||||||||||||||||||    
T  57417 tgaacaatttgttcctgaactatctgttcttgaaaaaactgtttctgagcaacctacccttgaaacccaatcagaaccagaacctatgatctcatcagat 57516  T
Q  134 gtctctg 140  Q
    |||||||    
T  57517 gtctctg 57523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 11237521 - 11237488
Alignment:
Q  107 gaatcagaacctatgatctcatcagatgtctctg 140  Q
    ||||||||||||||||||||||||||||||||||    
T  11237521 gaatcagaacctatgatctcatcagatgtctctg 11237488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 19285415 - 19285451
Alignment:
Q  104 tctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19285415 tctgaaccagaacctatgatctcatcagatgtctctg 19285451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 18544976 - 18544948
Alignment:
Q  112 agaacctatgatctcatcagatgtctctg 140  Q
    |||||||||||||||||||||||||||||    
T  18544976 agaacctatgatctcatcagatgtctctg 18544948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0752 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 3880 - 3844
Alignment:
Q  104 tctgaatcagaacctatgatctcatcagatgtctctg 140  Q
    |||||| ||||||||||||||||||||||||||||||    
T  3880 tctgaaccagaacctatgatctcatcagatgtctctg 3844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 5372 - 5406
Alignment:
Q  106 tgaatcagaacctatgatctcatcagatgtctctg 140  Q
    ||||||||||||||||||| |||||||||||||||    
T  5372 tgaatcagaacctatgatcacatcagatgtctctg 5406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 1301 - 1195
Alignment:
Q  34 tgaacaatctgttcctgaacacactgttcttgaacaaattgcttatgagcaaaccacctcagaaaccttgtctgaatcagaacctatgatctcatcagat 133  Q
    |||||||  |||||||||||   |||| | ||||||||||| || ||||||| | || |  ||||||   || ||| |||||||||||||||||||||||    
T  1301 tgaacaaattgttcctgaactatctgtccctgaacaaattgtttctgagcaacctacatttgaaacccaatcagaaccagaacctatgatctcatcagat 1202  T
Q  134 gtctctg 140  Q
    |||||||    
T  1201 gtctctg 1195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0537 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 2904 - 2933
Alignment:
Q  111 cagaacctatgatctcatcagatgtctctg 140  Q
    ||||||||||||||||||||||||||||||    
T  2904 cagaacctatgatctcatcagatgtctctg 2933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 17008174 - 17008141
Alignment:
Q  26 aacccctatgaacaatctgttcctgaacacactg 59  Q
    |||| |||||||||||||||||||||||||||||    
T  17008174 aacctctatgaacaatctgttcctgaacacactg 17008141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 17018980 - 17018947
Alignment:
Q  26 aacccctatgaacaatctgttcctgaacacactg 59  Q
    |||| |||||||||||||||||||||||||||||    
T  17018980 aacctctatgaacaatctgttcctgaacacactg 17018947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 17008158 - 17008078
Alignment:
Q  57 ctgttcttgaacaaattgcttatgagcaaaccacctcagaaaccttgtctgaatcagaacctatgatctcatcagatgtct 137  Q
    |||||| |||||| | || || ||||||| | |||  |||||| || |||||| ||||||| |||||||||||||||||||    
T  17008158 ctgttcctgaacacactggttctgagcaaccaaccctagaaactttatctgaaccagaaccaatgatctcatcagatgtct 17008078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 17018964 - 17018884
Alignment:
Q  57 ctgttcttgaacaaattgcttatgagcaaaccacctcagaaaccttgtctgaatcagaacctatgatctcatcagatgtct 137  Q
    |||||| |||||| | || || ||||||| | |||  |||||| || |||||| ||||||| |||||||||||||||||||    
T  17018964 ctgttcctgaacacactggttctgagcaaccaaccctagaaactttatctgaaccagaaccaatgatctcatcagatgtct 17018884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University