View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714-Insertion-2 (Length: 309)
Name: NF1714-Insertion-2
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 35368511 - 35368725
Alignment:
| Q |
30 |
ctgcatgtgtaatggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaa |
129 |
Q |
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||||||||||||||| || ||| ||||||||||| |||||||||||||||||||||| || | ||||||||||||||| ||||||||||||||||||||| |
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| T |
35368511 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa |
35368610 |
T |
|
| Q |
130 |
aatagaatgtttgagtggatgcatataatggatgtatagaacatataaagtggaacacgcgacaagttgattcgattcgattcattttgctatgaatatt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
35368611 |
aatagaatgtttgagtggatgcatataatggatgtatagaacatataaagtggaacacgcgacaagttgattcgattc-at---ttttgctatgaatatt |
35368706 |
T |
|
| Q |
230 |
tattggttagtcaaaggcc |
248 |
Q |
| |
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||||||||| ||||||||| |
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| T |
35368707 |
tattggttattcaaaggcc |
35368725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 35356035 - 35356183
Alignment:
| Q |
30 |
ctgcatgtgtaatggaatcttgtgcagccacattcgcaattgtctttaca-attcagcatacacgttggaaatagcagctaagaatcaagaatattgaca |
128 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35356035 |
ctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttacacattcagcttacacgttggaaatagcagctaagaatcaagaatattgaca |
35356134 |
T |
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| Q |
129 |
aaatagaatgtttgagtggatgcatataatggatgtatagaacatataaagtg |
181 |
Q |
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| T |
35356135 |
aaatagaatgtttgagtggatgc--ttaatggatg--tagaacatataaagtg |
35356183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 35374663 - 35374784
Alignment:
| Q |
30 |
ctgcatgtgtaatggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaa |
129 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35374663 |
ctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttaca-ttcagcatacacgttggaaatagcagctaagaatcaagaatattgacaa |
35374761 |
T |
|
| Q |
130 |
aatagaatgtttgagtggatgca |
152 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35374762 |
aatagaatgtttgagtggatgca |
35374784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 35343263 - 35343134
Alignment:
| Q |
30 |
ctgcatgtgtaatggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaa |
129 |
Q |
| |
|
||||||||||||||| || ||| ||||||||||| |||||||||||||||||||||| || | ||||||||||||||| ||||||||||||||||||||| |
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| T |
35343263 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa |
35343164 |
T |
|
| Q |
130 |
aatagaatgtttgagtggatgcatataatg |
159 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
35343163 |
aatagaatgtttgagtggatgcatataatg |
35343134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 35335892 - 35336021
Alignment:
| Q |
30 |
ctgcatgtgtaatggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaa |
129 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| | ||||||||||||| || ||| ||||||||||||||||||||| |
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| T |
35335892 |
ctgcatgtgtaatggcatcttgtgtagccacattggcaattgtctttacaattcaacttacacgttggaaa-agaagcaaagaatcaagaatattgacaa |
35335990 |
T |
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| Q |
130 |
aatagaatgtttgagtggatgcatataatgg |
160 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
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| T |
35335991 |
aataaaatgtttgagtggatgcatataatgg |
35336021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 35346407 - 35346532
Alignment:
| Q |
30 |
ctgcatgtgtaatggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaa |
129 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| || | |
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| T |
35346407 |
ctgcatgtgcaatgggatcttgtgcagccacattggcaattgtctttacaattcagcttacacgttggaaaatgcagcatagaatcaagaata---acca |
35346503 |
T |
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| Q |
130 |
aatagaatgtttgagtggatgcatataat |
158 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
35346504 |
aatagaatgtttgagtggatgcatataat |
35346532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 35351474 - 35351605
Alignment:
| Q |
32 |
gcatgtgtaatggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagc-----taagaatcaagaatattga |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||| || ||||||| |||||||||| |||||| |||||||||||||||||| |
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| T |
35351474 |
gcatgtgtaatggaatcttgtgcagccacattggcaattgtttttataagtcagcatgcacgttggaagaagcagcaaattaaagaatcaagaatattga |
35351573 |
T |
|
| Q |
127 |
caaaatagaatgtttgagtggatgcatataat |
158 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
35351574 |
aaaaatcgaatgtttgagtggatgcatataat |
35351605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 35347922 - 35347807
Alignment:
| Q |
47 |
tcttgtgcagccacattcgcaattgtctttacaattcagcata----cacgt-tggaaatagcagctaagaatcaagaatattgacaaaatagaatgttt |
141 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||| ||||| |||||| || ||| |||| |||||||||||||||||||||||||||| |
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| T |
35347922 |
tcttgtgcagccacattggcaattgtctctacaattcagcatatatacacgtatggaaa-agaagcaaagactcaagaatattgacaaaatagaatgttt |
35347824 |
T |
|
| Q |
142 |
gagtggatgcatataat |
158 |
Q |
| |
|
||||||||||||||||| |
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| T |
35347823 |
gagtggatgcatataat |
35347807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 35341070 - 35341188
Alignment:
| Q |
39 |
taatggaatcttgtgcagccacattcgcaa--ttgtctttacaattcagcatacacgttggaaatagcagctaagaatcaag----aatattgacaaaat |
132 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||| |
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|
| T |
35341070 |
taatgggatcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaat |
35341169 |
T |
|
| Q |
133 |
agaatgtttgagtggatgc |
151 |
Q |
| |
|
||||||||||||||||||| |
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| T |
35341170 |
agaatgtttgagtggatgc |
35341188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 35364700 - 35364830
Alignment:
| Q |
31 |
tgcatgtgtaatggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaa |
130 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| |||| ||||| || || || |||||||||||||| || ||| |
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| T |
35364700 |
tgcatgtgtaatgggatcttgtgcagccacattggcatttgtctttacaattcagcgtacatgttgggaaaagaagaaaagaatcaagaataatgggaaa |
35364799 |
T |
|
| Q |
131 |
atagaa-tgtttgagtggatgcatataatgg |
160 |
Q |
| |
|
||| || | ||| |||||||||||||||||| |
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|
| T |
35364800 |
atataatttttttagtggatgcatataatgg |
35364830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 35371879 - 35371983
Alignment:
| Q |
33 |
catgtgtaatggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaaat |
132 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||| || ||||||||||||||| ||||||||| || |||| | |||||||||||| |||| |||| |
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|
| T |
35371879 |
catgtgtaatgggatcttgtgcagcatcattggcatttctctttacaattcagcttacacgttgataaaagcaacaaagaatcaagaa---tgactaaat |
35371975 |
T |
|
| Q |
133 |
agaatgtt |
140 |
Q |
| |
|
|||||||| |
|
|
| T |
35371976 |
agaatgtt |
35371983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 35372014 - 35372046
Alignment:
| Q |
208 |
gattcattttgctatgaatatttattggttagt |
240 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
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|
| T |
35372014 |
gattcattttgctatgaatttttattggttagt |
35372046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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