View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714-Insertion-3 (Length: 352)

Name: NF1714-Insertion-3
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714-Insertion-3
NF1714-Insertion-3
[»] chr6 (12 HSPs)
chr6 (7-291)||(3168026-3168310)
chr6 (14-62)||(2034440-2034488)
chr6 (11-59)||(4420668-4420716)
chr6 (12-60)||(9667981-9668029)
chr6 (10-58)||(27909636-27909684)
chr6 (11-62)||(7785738-7785789)
chr6 (7-62)||(34939765-34939820)
chr6 (7-41)||(32171488-32171522)
chr6 (7-60)||(3155197-3155249)
chr6 (7-60)||(32577982-32578035)
chr6 (7-62)||(1275170-1275226)
chr6 (11-63)||(8420190-8420242)
[»] chr1 (7 HSPs)
chr1 (7-62)||(26184769-26184824)
chr1 (11-62)||(6292518-6292569)
chr1 (11-62)||(27140503-27140554)
chr1 (13-62)||(11639410-11639459)
chr1 (14-62)||(4202145-4202193)
chr1 (7-59)||(30257704-30257756)
chr1 (7-63)||(44422720-44422776)
[»] chr8 (11 HSPs)
chr8 (13-60)||(4055612-4055659)
chr8 (11-61)||(11795117-11795167)
chr8 (7-61)||(20672771-20672825)
chr8 (9-60)||(11183568-11183619)
chr8 (12-63)||(12361218-12361269)
chr8 (7-62)||(42215300-42215355)
chr8 (12-61)||(7646232-7646281)
chr8 (14-59)||(11813102-11813147)
chr8 (11-60)||(25869262-25869311)
chr8 (7-59)||(5088873-5088925)
chr8 (24-60)||(14949904-14949940)
[»] chr5 (9 HSPs)
chr5 (8-62)||(14331389-14331443)
chr5 (7-63)||(17258876-17258932)
chr5 (7-62)||(40205068-40205123)
chr5 (7-61)||(18543192-18543245)
chr5 (10-55)||(15074750-15074795)
chr5 (14-62)||(21768191-21768239)
chr5 (7-63)||(28586759-28586815)
chr5 (10-42)||(37526213-37526245)
chr5 (10-42)||(37588374-37588406)
[»] chr4 (8 HSPs)
chr4 (7-61)||(29467619-29467673)
chr4 (14-63)||(22684514-22684563)
chr4 (7-63)||(19422419-19422475)
chr4 (7-42)||(19429730-19429765)
chr4 (6-60)||(11264321-11264375)
chr4 (7-40)||(5131266-5131299)
chr4 (7-60)||(6987737-6987790)
chr4 (7-60)||(27721738-27721791)
[»] chr3 (7 HSPs)
chr3 (8-62)||(37825144-37825198)
chr3 (13-60)||(31010429-31010476)
chr3 (12-62)||(20192600-20192650)
chr3 (10-43)||(14548734-14548767)
chr3 (7-60)||(36200117-36200170)
chr3 (6-59)||(45432936-45432989)
chr3 (8-60)||(25925764-25925816)
[»] chr2 (10 HSPs)
chr2 (10-60)||(1939328-1939378)
chr2 (11-60)||(34652032-34652081)
chr2 (13-62)||(1647263-1647312)
chr2 (13-62)||(5781696-5781745)
chr2 (18-59)||(10285387-10285428)
chr2 (6-63)||(12215827-12215884)
chr2 (11-60)||(41042018-41042067)
chr2 (7-40)||(41817189-41817222)
chr2 (16-60)||(1830075-1830119)
chr2 (14-58)||(10563556-10563600)
[»] chr7 (5 HSPs)
chr7 (8-60)||(12234885-12234937)
chr7 (11-62)||(35267387-35267438)
chr7 (23-60)||(3500963-3501000)
chr7 (7-56)||(24363601-24363650)
chr7 (12-60)||(48157116-48157164)
[»] scaffold0159 (1 HSPs)
scaffold0159 (13-62)||(27028-27077)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 3168310 - 3168026
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagctaagctcttctaaatagtctcgcatgtttttatgtcggtagaaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3168310 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagctaagctcttctaaatagtctcgcatgtttttatgtcggtagaaat 3168211  T
Q  107 aagctcaataaaaccaatccaaacagattagggtcatgtccagattatagccagcctaagcataannnnnnngtcaaagacaactcagaaatataaaatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  3168210 aagctcaataaaaccaatccaaacagattagggtcatgtccagattatagccagcctaagcataaattttttgtcaaagacaactcagaaatataaaatc 3168111  T
Q  207 ttggccaaacaacttttacactttcttatatgatttagtttgtgtggggttgatgacgagtttaataaaatcagggtagcactgt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  3168110 ttggccaaacaacttttacactttcttatatgatttagtttgtgtggggctgacgacgagtttaataaaatcagggtagcactgt 3168026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 2034488 - 2034440
Alignment:
Q  14 agagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||| |||||||||||||||||||  ||||| ||||||||||||    
T  2034488 agagcttaatgaaataagctgaaaacagcttatggaaatgtcataagct 2034440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 4420668 - 4420716
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataa 59  Q
    ||||||||||| ||||||||||||||||||||  ||| |||||||||||    
T  4420668 tggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa 4420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 9668029 - 9667981
Alignment:
Q  12 ggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||||||    
T  9668029 ggagagcttatggaaataagttgaaaacagcttatggacatgtcataag 9667981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 27909684 - 27909636
Alignment:
Q  10 ctggagagcttaaggaaataagctgaaaacagccgatggacatgtcata 58  Q
    |||||||||||| |||||||||||||||||| |  ||||||||||||||    
T  27909684 ctggagagcttatggaaataagctgaaaacaacttatggacatgtcata 27909636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 7785789 - 7785738
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||||| |||||||||||||||||| |  || |||||||||||||||    
T  7785789 tggagagcttatggaaataagctgaaaacaacttatagacatgtcataagct 7785738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 34939765 - 34939820
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||||| ||| ||||||||||||||||||    ||||||||||||||||||    
T  34939765 atcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagct 34939820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 32171488 - 32171522
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacag 41  Q
    ||||||||||||||| |||||||||||||||||||    
T  32171488 atcctggagagcttatggaaataagctgaaaacag 32171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 3155197 - 3155249
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||||||||||| | ||||||||||||||||||||  || |||||||||||||    
T  3155197 atcctggagagct-atggaaataagctgaaaacagcttatagacatgtcataag 3155249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 32578035 - 32577982
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||| ||||| || ||||||||||||||||||||  | ||||||||||||||    
T  32578035 atcctgaagagcatatggaaataagctgaaaacagctcaaggacatgtcataag 32577982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 1275170 - 1275226
Alignment:
Q  7 atcctggagagcttaaggaaataagctg-aaaacagccgatggacatgtcataagct 62  Q
    ||||||||||||||| |||||||||||| |||||| |  | ||||||||||||||||    
T  1275170 atcctggagagcttatggaaataagctgaaaaacaacgtaaggacatgtcataagct 1275226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 8420242 - 8420190
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagcta 63  Q
    ||||||||||| ||||||||| |||||| |||   ||||||||||||||||||    
T  8420242 tggagagcttatggaaataagttgaaaatagcttgtggacatgtcataagcta 8420190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 26184769 - 26184824
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||||||||| |||||||| |||||||||||  ||||||||||||||||||    
T  26184769 atcctggagagcttatggaaataatctgaaaacagcttatggacatgtcataagct 26184824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 6292518 - 6292569
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||||| | ||||||||||||||||||  ||| ||||||||||||||    
T  6292518 tggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagct 6292569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 27140503 - 27140554
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||||| | |||||||||||||||| |  ||||||||||||||||||    
T  27140503 tggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagct 27140554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 11639459 - 11639410
Alignment:
Q  13 gagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||| | ||||||||| ||||||||  ||||||||||||||||||    
T  11639459 gagagcttatgaaaataagctaaaaacagcttatggacatgtcataagct 11639410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 4202193 - 4202145
Alignment:
Q  14 agagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    |||||||| | |||||||||||||| |||  ||||||||||||||||||    
T  4202193 agagcttacgaaaataagctgaaaatagcttatggacatgtcataagct 4202145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 30257704 - 30257756
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataa 59  Q
    ||||||||| |||||  |||||||||||||||||||  ||| |||||||||||    
T  30257704 atcctggagggcttatagaaataagctgaaaacagcttatgaacatgtcataa 30257756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 44422720 - 44422776
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagcta 63  Q
    ||||||||||||||| | |||||||||| |  ||||  |||||||||||||||||||    
T  44422720 atcctggagagcttatgaaaataagctgtagtcagcttatggacatgtcataagcta 44422776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 4055659 - 4055612
Alignment:
Q  13 gagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||    
T  4055659 gagagcttaaggaaataagctgaaaacagtttatggacatgtcataag 4055612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 11795117 - 11795167
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagc 61  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||||||    
T  11795117 tggagagcttatggaaataagctgaaaacaggttatggacatgtcataagc 11795167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 20672771 - 20672825
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagc 61  Q
    ||||||||||||||| | ||||||||||||||||||  ||| |||||||||||||    
T  20672771 atcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagc 20672825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 11183568 - 11183619
Alignment:
Q  9 cctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||||||||||| ||||||||||||||||||||  || ||||| |||||||    
T  11183568 cctggagagcttatggaaataagctgaaaacagcttatagacatatcataag 11183619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 12361218 - 12361269
Alignment:
Q  12 ggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagcta 63  Q
    |||||||| | ||||||||| ||||||||||  |||||||||||||||||||    
T  12361218 ggagagctaatggaaataagttgaaaacagcttatggacatgtcataagcta 12361269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 42215355 - 42215300
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||||||||| | ||||||||||||||||||  ||| ||| ||||||||||    
T  42215355 atcctggagagcttatgtaaataagctgaaaacagcttatgaacaagtcataagct 42215300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 7646232 - 7646281
Alignment:
Q  12 ggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagc 61  Q
    |||||||||| |||||||||||||||| ||| |||  |||||||||||||    
T  7646232 ggagagcttatggaaataagctgaaaatagctgatcaacatgtcataagc 7646281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 11813147 - 11813102
Alignment:
Q  14 agagcttaaggaaataagctgaaaacagccgatggacatgtcataa 59  Q
    ||||||||  |||||||||||||||||||| ||||| |||||||||    
T  11813147 agagcttacagaaataagctgaaaacagcctatggatatgtcataa 11813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 25869311 - 25869262
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||||| ||| |||||||||||||||||| |  ||||||||||||||||    
T  25869311 tggagagtttatggaaataagctgaaaacaacttatggacatgtcataag 25869262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 5088873 - 5088925
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataa 59  Q
    |||||||||||||||  |||||||| ||||||||||  |||||||||| ||||    
T  5088873 atcctggagagcttattgaaataagttgaaaacagcttatggacatgttataa 5088925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 14949904 - 14949940
Alignment:
Q  24 gaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||||||||||||||||  ||||||||||||||||    
T  14949904 gaaataagctgaaaacagcttatggacatgtcataag 14949940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 14331389 - 14331443
Alignment:
Q  8 tcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    |||||||||||||| | ||||||||||||| ||||  ||||||||||||||||||    
T  14331389 tcctggagagcttatgaaaataagctgaaatcagcttatggacatgtcataagct 14331443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 17258932 - 17258876
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagcta 63  Q
    |||||| |||||||| | ||||||||||||||||||  ||| |||||||||||||||    
T  17258932 atcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagcta 17258876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 40205123 - 40205068
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    |||||||||||||||  ||||||||||||||||||   |||||||||| |||||||    
T  40205123 atcctggagagcttatagaaataagctgaaaacagattatggacatgttataagct 40205068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 18543245 - 18543192
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagc 61  Q
    ||||||||||||||| | |||||||||||||||| |  |||||||||||||||||    
T  18543245 atcctggagagcttatg-aaataagctgaaaacaactcatggacatgtcataagc 18543192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 15074795 - 15074750
Alignment:
Q  10 ctggagagcttaaggaaataagctgaaaacagccgatggacatgtc 55  Q
    ||||| |||||| ||||||||||||||||||||  |||||||||||    
T  15074795 ctggaaagcttatggaaataagctgaaaacagcttatggacatgtc 15074750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 21768239 - 21768191
Alignment:
Q  14 agagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    |||||||| | ||||||| ||||||||||  ||||||||||||||||||    
T  21768239 agagcttacgaaaataagttgaaaacagcgtatggacatgtcataagct 21768191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 28586815 - 28586759
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagcta 63  Q
    ||||| |||||||||  |||||||||||||||||||  | ||| |||||||||||||    
T  28586815 atcctagagagcttatcgaaataagctgaaaacagcttacggatatgtcataagcta 28586759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 37526245 - 37526213
Alignment:
Q  10 ctggagagcttaaggaaataagctgaaaacagc 42  Q
    |||||||||||| ||||||||||||||||||||    
T  37526245 ctggagagcttatggaaataagctgaaaacagc 37526213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 37588406 - 37588374
Alignment:
Q  10 ctggagagcttaaggaaataagctgaaaacagc 42  Q
    |||||||||||| ||||||||||||||||||||    
T  37588406 ctggagagcttatggaaataagctgaaaacagc 37588374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 29467673 - 29467619
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagc 61  Q
    ||||| ||||| ||| ||||||||||||||||||||  |||||||||||||||||    
T  29467673 atcctagagagtttatggaaataagctgaaaacagcttatggacatgtcataagc 29467619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 22684563 - 22684514
Alignment:
Q  14 agagcttaaggaaataagctgaaaacagccgatggacatgtcataagcta 63  Q
    ||||||||| |||||||||||||||||||  |||||||| ||||||||||    
T  22684563 agagcttaaagaaataagctgaaaacagcttatggacatatcataagcta 22684514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 19422419 - 19422475
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagcta 63  Q
    ||||||||||||||| ||||||||| |||||| |||  ||| |||||||||||||||    
T  19422419 atcctggagagcttatggaaataagttgaaaaaagcgtatgcacatgtcataagcta 19422475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 19429730 - 19429765
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagc 42  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19429730 atcctggagagcttatggaaataagctgaaaacagc 19429765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 11264321 - 11264375
Alignment:
Q  6 catcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||| ||||||||| ||||||||| |||||||||   ||||||||||||||||    
T  11264321 catcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataag 11264375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 5131299 - 5131266
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaaca 40  Q
    ||||||||||||||| ||||||||||||||||||    
T  5131299 atcctggagagcttatggaaataagctgaaaaca 5131266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 6987790 - 6987737
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||||||||||||| ||||||||| |||||| ||   ||||||||||||||||    
T  6987790 atcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataag 6987737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 27721738 - 27721791
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||||||||||||  | ||||||||||||||||||  ||||| ||||||||||    
T  27721738 atcctggagagcttgcgaaaataagctgaaaacagcttatggatatgtcataag 27721791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 37825144 - 37825198
Alignment:
Q  8 tcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    |||||||||||||| |||||||| ||||||||| |  ||||||||||||||||||    
T  37825144 tcctggagagcttatggaaataacctgaaaacaacttatggacatgtcataagct 37825198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 31010429 - 31010476
Alignment:
Q  13 gagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||||||| |||| |||||||||||||||  ||||||||||||||||    
T  31010429 gagagcttatggaattaagctgaaaacagcttatggacatgtcataag 31010476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 20192650 - 20192600
Alignment:
Q  12 ggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    |||||||||| |||||| || ||||||||||  ||||||||||||||||||    
T  20192650 ggagagcttatggaaatgagttgaaaacagcttatggacatgtcataagct 20192600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 14548767 - 14548734
Alignment:
Q  10 ctggagagcttaaggaaataagctgaaaacagcc 43  Q
    |||||||||||| |||||||||||||||||||||    
T  14548767 ctggagagcttatggaaataagctgaaaacagcc 14548734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 36200117 - 36200170
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||| |||||| | |||||||||||||||||| |  ||||||||||||||||    
T  36200117 atcctgtagagctcatggaaataagctgaaaacaacttatggacatgtcataag 36200170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 45432989 - 45432936
Alignment:
Q  6 catcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataa 59  Q
    ||||||| |||||||| |||||||||||||||||| |  ||| |||||||||||    
T  45432989 catcctgtagagcttatggaaataagctgaaaacaacttatgaacatgtcataa 45432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 25925764 - 25925816
Alignment:
Q  8 tcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||||||||||| | ||||||| ||||||||||  ||| ||||||||||||    
T  25925764 tcctggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataag 25925816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 1939378 - 1939328
Alignment:
Q  10 ctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||||||||| ||||||||| ||||||||||  ||||||||||||||||    
T  1939378 ctggagagcttatggaaataagttgaaaacagcttatggacatgtcataag 1939328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 34652081 - 34652032
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||||||||| ||||||||| ||||||||||  ||||||||||||||||    
T  34652081 tggagagcttatggaaataagttgaaaacagcttatggacatgtcataag 34652032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 1647263 - 1647312
Alignment:
Q  13 gagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||| ||||||||||||||||||||  |||  |||||||||||||    
T  1647263 gagagcttatggaaataagctgaaaacagcttatgagcatgtcataagct 1647312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 5781696 - 5781745
Alignment:
Q  13 gagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||| |||||||||||||||||||   ||| ||||||||||||||    
T  5781696 gagagcttatggaaataagctgaaaacagtttatgcacatgtcataagct 5781745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 10285387 - 10285428
Alignment:
Q  18 cttaaggaaataagctgaaaacagccgatggacatgtcataa 59  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  10285387 cttaagaaaataagctgaaaacagcttatggacatgtcataa 10285428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 12215827 - 12215884
Alignment:
Q  6 catcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagcta 63  Q
    |||||| ||||||||| || |||| | ||||||||||  |||||||||||||||||||    
T  12215827 catccttgagagcttatgggaatatggtgaaaacagcttatggacatgtcataagcta 12215884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 41042067 - 41042018
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||||| ||| ||||||||| |||||||||| ||||||||||| |||||    
T  41042067 tggagagtttatggaaataagttgaaaacagctgatggacatgtaataag 41042018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 41817189 - 41817222
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaaca 40  Q
    ||||||||||||||| ||||||||||||||||||    
T  41817189 atcctggagagcttatggaaataagctgaaaaca 41817222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 1830075 - 1830119
Alignment:
Q  16 agcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||| |||||||||||||||||  || ||||||||||||||||    
T  1830075 agcttatggaaataagctgaaaactccctatggacatgtcataag 1830119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 10563600 - 10563556
Alignment:
Q  14 agagcttaaggaaataagctgaaaacagccgatggacatgtcata 58  Q
    |||||||||| |||||||||||||| |||  ||||||||||||||    
T  10563600 agagcttaagaaaataagctgaaaatagcttatggacatgtcata 10563556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 12234937 - 12234885
Alignment:
Q  8 tcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||| ||||||||| ||||||||||||||||||||  || |||||||||||||    
T  12234937 tcctagagagcttatggaaataagctgaaaacagcttatagacatgtcataag 12234885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 35267387 - 35267438
Alignment:
Q  11 tggagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    |||||||||||  ||||||||||||||||| || ||| ||||||||||||||    
T  35267387 tggagagcttatagaaataagctgaaaacaacctatgaacatgtcataagct 35267438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 3501000 - 3500963
Alignment:
Q  23 ggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  3501000 ggaaataagctgaaaacagctgatgtacatgtcataag 3500963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24363650 - 24363601
Alignment:
Q  7 atcctggagagcttaaggaaataagctgaaaacagccgatggacatgtca 56  Q
    ||||||||||| ||| |||||||||||||||||| |  ||||||||||||    
T  24363650 atcctggagaggttatggaaataagctgaaaacaacttatggacatgtca 24363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 48157164 - 48157116
Alignment:
Q  12 ggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 60  Q
    ||||| |||| ||||||||||||||||||||  ||||||||| ||||||    
T  48157164 ggagatcttatggaaataagctgaaaacagcttatggacatggcataag 48157116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27028 - 27077
Alignment:
Q  13 gagagcttaaggaaataagctgaaaacagccgatggacatgtcataagct 62  Q
    ||||||||| |||||||||||||||||||   ||| ||||||||||||||    
T  27028 gagagcttatggaaataagctgaaaacagtttatgcacatgtcataagct 27077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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