View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714-Insertion-4 (Length: 874)
Name: NF1714-Insertion-4
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 589; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 54 - 741
Target Start/End: Complemental strand, 9818691 - 9817988
Alignment:
| Q |
54 |
tataagtaattggggatggtcatcctccatcatctccgaaaatcatgttgctcagcaatcttcttacatagctaattctgtttctattgatggaattgaa |
153 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
9818691 |
tataagtaattggggatggtcatcctccatcatctccgaaaatcatgttgctcaggaatcttcttgcatagctgattctgtttctattgatggaaatgaa |
9818592 |
T |
|
| Q |
154 |
caaatatttaccaaaggtggtataactaaggtctctatacaacagaagcggataaaataaaacaacgactagatactttaaacgtcgtcatctcttattt |
253 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9818591 |
caaatatttaccaaaggtggcataactaaggtttctatacaacagaatcggataaaataaaacaacgactagatactttaaacatcgtcatctcttattt |
9818492 |
T |
|
| Q |
254 |
tgttcaaaacacggtaatgaacagattgt-------gatctccacctgtagcatagcaactgatattacgtaactttggtaatttagtgtctgatatata |
346 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9818491 |
tgtttaaaacacggtaatgaacagattgttgctgttgatctccacctgtagcatagcaactgatattacgtaactttggtaatttagtgtctgatatata |
9818392 |
T |
|
| Q |
347 |
tgaaatttgaatacattttttacttttcatttccataccaagagggttacagtccctaccaatggtattatgtactaaataatatacatgtagtcgaata |
446 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9818391 |
tgaaatttgaatacatttttaactttccatttccataccaagagggttacagtccctaccaatggtattatgtactaaataatatacatgtagtcgaata |
9818292 |
T |
|
| Q |
447 |
cattttcaactttccatttccctacaaagagggttatagtccctaccaatggattaaacagatgacattccatcatataactttgggttagactgatcag |
546 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9818291 |
cattttcaactttccatttccctacaaagagggttacagtccctaccaatggattaaacagatgacattccatcatataactttgggttagactgatcag |
9818192 |
T |
|
| Q |
547 |
tg-------gcaactggttgagattatgaacgtaaacataacctggtgcatgcagacaaccgttctttgccatttgataaattatcaagccatctatacg |
639 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9818191 |
tggcaagtggcaactggttgagattatgaacgtaaacataacctggtgcatgcagacaaccgttctttgccatttgataaattatcaagccatctatacg |
9818092 |
T |
|
| Q |
640 |
atcaaggctaatgcattaatcaatgtctctaaaatatctttgaaaacattcatcatcc--ttgcaatagttgcagatagctattgtaaagcagtcatcga |
737 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
9818091 |
atcaaggctaatgcattaatcaatgtctctaaaatatctttgaaaacattcatcatccttttgcaatagttgcagatagctgttgtaaagcagtcatcga |
9817992 |
T |
|
| Q |
738 |
atcc |
741 |
Q |
| |
|
|||| |
|
|
| T |
9817991 |
atcc |
9817988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 497 - 715
Target Start/End: Original strand, 9855336 - 9855559
Alignment:
| Q |
497 |
ggattaaacagatgacattccatcatataactttgggttagactgatcagtggc-------aactggttgagattatgaacgtaaacataacctggtgca |
589 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||| | |||||||| |||||||| |
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| T |
9855336 |
ggattaaacagatggcattccatcata--actttgggttagactaatcagtggcaaatggcaactggttgaggttatgaatgaaaacataatctggtgca |
9855433 |
T |
|
| Q |
590 |
tgcagacaaccgttctttgccatttgataaattatcaagccatctatacgatcaaggctaatgcattaatcaatgtctctaaaatatctttgaaaacatt |
689 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9855434 |
tgccaacaaccgttctttgccatttgataaattatcaagccatctatatgatcaaggctaatgcattaatcaacgtctctaaaatatctttgaaaacatt |
9855533 |
T |
|
| Q |
690 |
catcatccttgcaatagttgcagata |
715 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
9855534 |
catcatccttgcaatagttgcagata |
9855559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 739 - 874
Target Start/End: Complemental strand, 9817617 - 9817481
Alignment:
| Q |
739 |
tcccttgtgcaggtttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccct |
838 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9817617 |
tcccttgtgcaggtttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccct |
9817518 |
T |
|
| Q |
839 |
acaacc-aaacaattctcaatatttgatccttgatag |
874 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||| |
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| T |
9817517 |
acaaccaaaaaaattctcaatatttgatccttgatag |
9817481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 241 - 445
Target Start/End: Original strand, 9855112 - 9855323
Alignment:
| Q |
241 |
tcatctcttattttgttcaaaacacggtaatgaacagattgt-------gatctccacctgtagcatagcaactgatattacgtaactttggtaatttag |
333 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||| | |
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| T |
9855112 |
tcatctcttattttgttaaaaacaaggtaacgaacaaattgttgcattcgatctccacctgtaaaatagcaactgatattacataacttttgtaatttgg |
9855211 |
T |
|
| Q |
334 |
tgtctgatatatatgaaatttgaatacattttttacttttcatttccat----accaagagggttacagtccctaccaatggtattatgtactaaataat |
429 |
Q |
| |
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| | |||||||||||||||||||||||| ||| ||||| || ||| | ||||||||| ||||| ||||||| ||| |||||||||||| |||||| |
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| T |
9855212 |
tatatgatatatatgaaatttgaataca--tttaactttacagctcctttatcaccaagaggattacaatccctactaat-gtattatgtact-aataat |
9855307 |
T |
|
| Q |
430 |
atacatgtagtcgaat |
445 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
9855308 |
atacatgtagttgaat |
9855323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 753 - 869
Target Start/End: Complemental strand, 24351019 - 24350903
Alignment:
| Q |
753 |
ttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccctacaacc-aaacaat |
851 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
24351019 |
ttcaaggttcaaaatagatattgtcacaaatt-cagcacaaaccaactcatttagtcattgcaaaatgaaaatcattaacttctctacaaccaaaacaat |
24350921 |
T |
|
| Q |
852 |
tctcaatatttgatcctt |
869 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
24350920 |
tatcaatatttgatcctt |
24350903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 15216849 - 15216804
Alignment:
| Q |
8 |
ataagaaattagaaaaacctaaattattctataattatatgtctta |
53 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||||| |
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|
| T |
15216849 |
ataagaaattataaaaatctaaattattctagaattatatgtctta |
15216804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 29719020 - 29718977
Alignment:
| Q |
8 |
ataagaaattagaaaaacctaaattattctataattatatgtct |
51 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
29719020 |
ataagaaattataaaaacctaaattatcctaaaattatatgtct |
29718977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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