View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_high_10 (Length: 341)
Name: NF17140_high_10
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 329
Target Start/End: Complemental strand, 44734346 - 44734024
Alignment:
| Q |
6 |
accttgaacacaaacaaaaaccaaaagaaagagaaccaaattaaccttgttgtgt--cagttgaattttcaagtgttttaactaacttagtagtttgatt |
103 |
Q |
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| T |
44734346 |
accttgaacacaaacaaaaaccaaaagaaagagaaccaaattaaccttgttgtgtgtcagttgagttttcaagtgttttaactaacttagt---ttgatt |
44734250 |
T |
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| Q |
104 |
tgatcatcaattagccaaaacgggtcttccactgtggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctccttgcctttctcttc |
203 |
Q |
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| T |
44734249 |
tgatcatcaattagccaaaacgggtcttccactttggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctccttgcctttctcttc |
44734150 |
T |
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| Q |
204 |
caccagggggtgttggatgagcaatttttgcagcttcaacagcttcaagatcatacctcccctaacttcgtctccgaagttgtcaacatttattttcatg |
303 |
Q |
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| T |
44734149 |
caccagggggtgttggatgagcaatttttgcagcttcaacagcttcaagatcacacctcccctaacttcgtatccgaagttgtcaacatttattttcatg |
44734050 |
T |
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| Q |
304 |
agtctgaaaagctactcactaatctc |
329 |
Q |
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| T |
44734049 |
agtctgaaaaactactcaccaatctc |
44734024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 2259650 - 2259724
Alignment:
| Q |
116 |
agccaaaacgggtcttccactgtggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctcct |
190 |
Q |
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| T |
2259650 |
agccaaaacgggtctccctctttggttgcttggattgggtccggacctcttgtgggccgacatgaaccgcctcct |
2259724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 2259944 - 2260049
Alignment:
| Q |
216 |
ttggatgagcaatttttgcagcttcaacagcttcaagatcatacctcccctaacttcgtctccgaagttgtcaacatttattttcatgagtctgaaaagc |
315 |
Q |
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|||||||||||||| |||||||| || ||||| |||||| | ||||| || ||||| |||| || ||||||||||||||||| || || ||||| |||| |
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| T |
2259944 |
ttggatgagcaattcttgcagctccagcagctacaagatgaaacctcaccaaactttgtctatgaggttgtcaacatttatttccacgaatctgagaagc |
2260043 |
T |
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| Q |
316 |
tactca |
321 |
Q |
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| |||| |
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| T |
2260044 |
ttctca |
2260049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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