View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_high_11 (Length: 333)
Name: NF17140_high_11
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 41599913 - 41599611
Alignment:
| Q |
16 |
gaaggtaagaatctatgtaatgtgctatcatgtctacagtctacacagagacaagcgaggaactccgctactagtgtgttgtgtcaaaaagagagaggac |
115 |
Q |
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| T |
41599913 |
gaaggtaagaatctatgtaatgtgctatcatgtctacagtctacacagagacaagcgaggaactccgctactagtgtgttgtgtcaaaaagagagaggac |
41599814 |
T |
|
| Q |
116 |
ttagtgggacaactcagaattgcagattt----aattcacaatgaccacagcatatactaaagagtaggcaagagaactatattacagaaagagacgaag |
211 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41599813 |
ttagtgggacaactcagaattgcagatttcacaaattcacaatgaccacagcatatactaaagagtaggcaagagaactatattacagaaagagacgaag |
41599714 |
T |
|
| Q |
212 |
aag-nnnnnnnnngctttctggtccacaccaaagtcatggaccatatccctgaacaaagtttcatggtccagaccaaggtgatgtacttcaacactttca |
310 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41599713 |
aagaaaaaaaaaatctttctggtccacaccaaagtcatggaccatatccctgaacaaagtttcatggtccagaccaaggtgatgtacttcaacactttca |
41599614 |
T |
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| Q |
311 |
cat |
313 |
Q |
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| T |
41599613 |
cat |
41599611 |
T |
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