View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_high_12 (Length: 322)
Name: NF17140_high_12
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 5665080 - 5664762
Alignment:
| Q |
1 |
ctgcctccctcagtttgctcatgtacttctcatgagatttctcttaccatgtcatggttgtatcattaattgactgttgagacttaaaatacacatctga |
100 |
Q |
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| T |
5665080 |
ctgcctccctcagtttgctcatgtacttctcatgagatttctcttaccatgtcatggttgtatcattaattggctgttgagacttaaaatacacatctga |
5664981 |
T |
|
| Q |
101 |
gggttcatgtaaaactcccgctttctcacaaagaaggttaattacgtaggtgtgaccaagggtggtgtttttggtggagactatatccttaatgttgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5664980 |
gggttcatgtaaaactcccgctttctcacaaagaaggttaattacgtaggtgtgaccaagggtggtgtttttggtggagaacatatccttaatgttgtaa |
5664881 |
T |
|
| Q |
201 |
gcaatcagcttccccacatccatctcttcatgatcccgttgaaaaatatctagttcttgagttagctccagagaaaagtgagatggttgaggggctgatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5664880 |
gcaatcagcttccccacatccatctcttcatgatcccgttgaaaaatatctagttcttgagttagctacagagaaaagtgagatggttgaggggctgatt |
5664781 |
T |
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| Q |
301 |
ttattttgcatttggtgtt |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
5664780 |
ttattttgcatttggtgtt |
5664762 |
T |
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