View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17140_high_13 (Length: 317)

Name: NF17140_high_13
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17140_high_13
NF17140_high_13
[»] chr7 (5 HSPs)
chr7 (35-256)||(24230686-24230913)
chr7 (248-305)||(24232643-24232700)
chr7 (248-304)||(24122148-24122204)
chr7 (248-302)||(24132579-24132633)
chr7 (252-305)||(24238084-24238137)
[»] chr2 (3 HSPs)
chr2 (162-256)||(42769517-42769611)
chr2 (248-304)||(10988834-10988890)
chr2 (248-294)||(28160509-28160555)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 35 - 256
Target Start/End: Original strand, 24230686 - 24230913
Alignment:
Q  35 tattggagtattatgtatcgagtcacaaactaaacttttttgcaatattgatgtgtggctccatcaaaaagtgaattcggttcaacaataaacctatcaa 134  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||    
T  24230686 tattggactattatgtaccgagtaacaaactaaacttttttgcaatattgatgtgtggctctatcaaaaagagaattcggttcagcaataaacatatcaa 24230785  T
Q  135 caaagatttaagt--ataaaaaat----agtgatacctgtattttagggggcgggggcaattcttccaccaatgtagctcttggaacctgcaaaacttga 228  Q
    ||||||| ||| |  |||||||||    |||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| ||||||||||||    
T  24230786 caaagatgtaaataaataaaaaatagcgagtgatacctgtattttagggggcaggggcaattcttccaccaaagtggctgttggaacttgcaaaacttga 24230885  T
Q  229 gtaccacttgaacaatccggaagctgaa 256  Q
    |||||||| |||||||| ||||||||||    
T  24230886 gtaccactcgaacaatctggaagctgaa 24230913  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 24232643 - 24232700
Alignment:
Q  248 gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttgttc 305  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  24232643 gaagctgaagagagcatcaacgaaatccttcccagcctcagcatacacaactttgttc 24232700  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 24122148 - 24122204
Alignment:
Q  248 gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttgtt 304  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  24122148 gaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtt 24122204  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 24132579 - 24132633
Alignment:
Q  248 gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttg 302  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  24132579 gaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttg 24132633  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 24238137 - 24238084
Alignment:
Q  252 ctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttgttc 305  Q
    |||||||||||||| || |||||||| || || ||||||||||| |||||||||    
T  24238137 ctgaagagagcatcgacaaaatccttgcctgcctcagcatacacaactttgttc 24238084  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 42769611 - 42769517
Alignment:
Q  162 tacctgtattttagggggcgggggcaattcttccaccaatgtagctcttggaacctgcaaaacttgagtaccacttgaacaatccggaagctgaa 256  Q
    ||||||||| ||||| ||| | |||||| |||||||| | | ||||||||||||||||| |||||||||||| | ||||| ||||||||||||||    
T  42769611 tacctgtatgttaggaggcagaggcaatccttccaccgaaggagctcttggaacctgcacaacttgagtaccgcctgaaccatccggaagctgaa 42769517  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 10988890 - 10988834
Alignment:
Q  248 gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttgtt 304  Q
    ||||||||||||| ||||||||||||||||| | || ||||||||||  ||||||||    
T  10988890 gaagctgaagagaacatcaacgaaatccttcactgcctcagcatacagaactttgtt 10988834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 28160555 - 28160509
Alignment:
Q  248 gaagctgaagagagcatcaacgaaatccttccccgcttcagcataca 294  Q
    ||||||||| |||||| |||| ||||||||||| |||||||||||||    
T  28160555 gaagctgaaaagagcaccaacaaaatccttccctgcttcagcataca 28160509  T

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