View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_high_20 (Length: 235)
Name: NF17140_high_20
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29211701 - 29211917
Alignment:
| Q |
1 |
atcaattagaaccttgtccaatagagtctctaattaatacatcaaatttagagaatctagccatgaatggcgaaagtaagagacacatagcaagtgaata |
100 |
Q |
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| T |
29211701 |
atcaattagaaccttgtccaatagagtctctaat----acatcaaatttagagaatctagccatgaatggcgaaagtaagagacacatagcaagtgaaca |
29211796 |
T |
|
| Q |
101 |
aatagaaatcttatatagtgacaaattgttattacgttgttcacacatttgttcataaattacgttgttcataaattatgagatttttacaaaagtctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29211797 |
aatagaaatcttatatagtgacaaattgttattacgttgttcacacatttgttcataaattacgttgttcataaattatgagatttttacaaaagtctct |
29211896 |
T |
|
| Q |
201 |
ttcattaatgatatagaaaga |
221 |
Q |
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||||||||| ||||||||||| |
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| T |
29211897 |
ttcattaattatatagaaaga |
29211917 |
T |
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