View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_high_6 (Length: 436)
Name: NF17140_high_6
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 44054292 - 44054662
Alignment:
| Q |
1 |
atatggtatcatgaattggaaccataactagtggtctgtgtagtgaatagaacacattctactggatttttccatattcctgatgatgcaaatctgtaaa |
100 |
Q |
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| T |
44054292 |
atatggtatcatgaattggaaccataactagtggtttgtgtagtgaatagaacacattctactggatttttccatattcctgatgatgcaaatctataaa |
44054391 |
T |
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| Q |
101 |
ttctagatgcctcaagaatctattgatcctctaaactagaaggatcatcacaaaaaatatgagtcttaagctcatagattatggtaacgtagtgctcata |
200 |
Q |
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| T |
44054392 |
ttctagatgcctcaagaatctattgatcctctaaactagaaggatcatcacaaaaaat--gagtcttaagctcatagattatggtaacgtaatgctcgta |
44054489 |
T |
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| Q |
201 |
tataacaatcatgtaggttacttgtgggagagtttcaaccacccaataaacacatttcttaatggaatgacatttcatgaaaacttaacattgacttctt |
300 |
Q |
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| T |
44054490 |
tataacaatcatgtaggttacttgtgggagagtttcaaccaccgaataaacacatttcttaatggaatgacattccatgaaaacttaacattgacttctt |
44054589 |
T |
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| Q |
301 |
ggaaaaacgaaaatggccaaggaagtggaagcttcatctttcaataggttgtgttctttgagaaggatatagt |
373 |
Q |
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| T |
44054590 |
ggaaaaacgaaaatgaccaaggaagtggaagcttcatctttcaataggttgtgttctttgagaaggatatagt |
44054662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 373
Target Start/End: Original strand, 44059775 - 44059887
Alignment:
| Q |
261 |
aatggaatgacatttcatgaaaacttaacattgacttcttggaaaaacgaaaatggccaaggaagtggaagcttcatctttcaataggttgtgttctttg |
360 |
Q |
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| T |
44059775 |
aatggaatgacatttcatgaaaccttaagattgatattttgaaaaaacgataatgactaaggaagtggaagcttcatctttctatatgttgtgttatttg |
44059874 |
T |
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| Q |
361 |
agaaggatatagt |
373 |
Q |
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| T |
44059875 |
agaaggatatagt |
44059887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 44059629 - 44059710
Alignment:
| Q |
56 |
attctactggatttttccatattcctgatgatgcaaatctgtaaattctagatgcctcaagaatctattgatcctctaaact |
137 |
Q |
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| T |
44059629 |
attctactggatttttccatatatataatgatgcaaatttataaattctatatgactcaagaatctattgatcctctaaact |
44059710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 44059709 - 44059776
Alignment:
| Q |
171 |
ctcatagattatggtaacgtagtgctcatatataacaatcatgtaggttacttgtgggagagtttcaa |
238 |
Q |
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| T |
44059709 |
ctcatagattatgataatgtagtgctcataaataacaatcatgtaggttatttgagggagagtttcaa |
44059776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 44050557 - 44050593
Alignment:
| Q |
254 |
atttcttaatggaatgacatttcatgaaaacttaaca |
290 |
Q |
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| T |
44050557 |
atttcttcatggaatgacatttcatgaaaacttaaca |
44050593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 44058616 - 44058666
Alignment:
| Q |
85 |
gatgcaaatctgtaaattctagatgcctcaagaatctattgatcctctaaa |
135 |
Q |
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| T |
44058616 |
gatggaaatctagaaattctagatgactcaagaatttattgatcctctaaa |
44058666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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