View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_high_8 (Length: 393)
Name: NF17140_high_8
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 19172651 - 19172281
Alignment:
| Q |
1 |
tcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgttctatctccggcgcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19172651 |
tcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgttctatctccggcgact |
19172552 |
T |
|
| Q |
101 |
ccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaaccacagacccttctcaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19172551 |
ccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaatcacagacccttctcaaat |
19172452 |
T |
|
| Q |
201 |
cctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatcttgctcgttcttttcttgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172451 |
cctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatcttgctcgttcttttcttgac |
19172352 |
T |
|
| Q |
301 |
gacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaat |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172351 |
gacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaat |
19172281 |
T |
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