View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_low_1 (Length: 742)
Name: NF17140_low_1
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_low_1 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 652; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 16 - 725
Target Start/End: Complemental strand, 46337885 - 46337176
Alignment:
| Q |
16 |
aatatgggttatcatctcagaagtttctcaaaaagtgtgttagtaagaatatggcatgctgaaaagactcgtattaatttgtggggttaatcgacaatcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46337885 |
aatatgggttatcatctcagaagtttctcaaaaagtgtgttagtaagaatatggcatgctgaaaagactcgtattaatttgtggggttaatcgacaatcc |
46337786 |
T |
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| Q |
116 |
tgaaagtaatttggacgttacataaatcacacttgattagttgggaagtttgtttcttacctnnnnnnntgtaggccttgggattagaagtcaacattaa |
215 |
Q |
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| T |
46337785 |
tgaaagtaatttgggcgttacataaatcacacttgattaattgggaagtttgtttcttacctaaaaaaatgtaggccttgggattagaagtcatcatcaa |
46337686 |
T |
|
| Q |
216 |
atgaatgaacttgtccaaatgtaaatgctttggaatataatcaaaagacatgatgatctcttttaccctacctgtacaatacatatgttaaaaataatga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46337685 |
atgaatgaacttgtccaaatgtaaatgctttggaatataatcaaaagacatgatgatctcttttaccctacctgtacaatacatatgttaaaaataatga |
46337586 |
T |
|
| Q |
316 |
tttgcatgttaaattaaaatcaactcttaactctatgactctcctttatggaaagatttaacaagtatttgggatcagtttcaaaatcatattgtgtagc |
415 |
Q |
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| T |
46337585 |
tttgcatgttaaattaaaatcaactcttaactctatgactctcctttatggaaagatttaacaagtatttgggatcagtttcaaaatcatattgtgtagc |
46337486 |
T |
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| Q |
416 |
agttgtgatatttgaatcatattagcttttggatggttaagtggaatccttgtagagcttctctcatgttaacttatattcgaccttcgattgataatac |
515 |
Q |
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| T |
46337485 |
agttgtgatatttgaatcatattagcttttggatggttaagtggaatccttgtagagcttctctcatgttaacttatattcgaccttcgattgataatac |
46337386 |
T |
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| Q |
516 |
cctaattattatggacactctgataatgagaaaacaagcattgtgacatatatgttagccnnnnnnnggtgcctatagatattgatggcccaacttctat |
615 |
Q |
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| T |
46337385 |
cctaattattatggacactctgataatgagaaaacaagcattgtgacatatatgttagcctttttttggtgcctatagatattgatggcccaacttctat |
46337286 |
T |
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| Q |
616 |
ggggtgagaaggcaccaacactcgtcaattcacgtaccaaagtaccaatgaccttcaacaaggaaactacaaacatttatgaggattgaataagatatgg |
715 |
Q |
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| T |
46337285 |
ggggtgagaaggcaccaacactcgtcaattcacgtaccaaagtaccaatgaccttcaacaaggaaactacaaacatttatgaggattgaataagatatgg |
46337186 |
T |
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| Q |
716 |
gcttggaagg |
725 |
Q |
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|||||||||| |
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| T |
46337185 |
gcttggaagg |
46337176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 20053999 - 20053948
Alignment:
| Q |
70 |
catgctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag |
121 |
Q |
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| T |
20053999 |
catgctgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaaag |
20053948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 50002623 - 50002574
Alignment:
| Q |
73 |
gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagt |
122 |
Q |
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| T |
50002623 |
gctgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaaagt |
50002574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 30719717 - 30719678
Alignment:
| Q |
77 |
aaaagactcgtattaatttgtggggttaatcgacaatcct |
116 |
Q |
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| T |
30719717 |
aaaagactcgtattaatttgtggggtcaatcgccaatcct |
30719678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 24182160 - 24182107
Alignment:
| Q |
75 |
tgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagtaatttg |
128 |
Q |
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| T |
24182160 |
tgaaaagattcgtgttggtttgtggggttagtcgacaatcctgaaagtcatttg |
24182107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 63023 - 62973
Alignment:
| Q |
73 |
gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagta |
123 |
Q |
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| T |
63023 |
gctgaaaagactcgtattggtttgtggggtcagtcggcaatcctgaaagta |
62973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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