View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_low_18 (Length: 250)
Name: NF17140_low_18
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 34411057 - 34411302
Alignment:
| Q |
1 |
cattgctatttacggcgaatgccaatatcacgagcgctccacgaatttgctttccatgtgtctagttatttctccacttaatttttagtcccaacacaca |
100 |
Q |
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| T |
34411057 |
cattgctatttacagcgaatgccaatatcacgagcgcttcacgaatttgctttccatgtgtctagttatt-ctccacttaattttttctcccaacacaca |
34411155 |
T |
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| Q |
101 |
------------agtaccaacactgtttagtgtccagtgtccatgagaaaataatgacnnnnnnnnagggagtagaaatcaatgactttaataagtataa |
188 |
Q |
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| T |
34411156 |
tgtagtgtagcaagtaccaacactgtttagtgtc-agtgtccatgagaaaataatgacttttttttagggagtagaaaccaatgactttaataagtataa |
34411254 |
T |
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| Q |
189 |
cttcgttagtttattatgatccttcattagtggttggatatcatgttt |
236 |
Q |
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| T |
34411255 |
cttcgttagtttattatgatccttcattagtggttggatatcatgttt |
34411302 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 8185070 - 8185194
Alignment:
| Q |
1 |
cattgctatttacggcgaatgccaatatcacgagcgctccacgaatttgctttccatgtgtctagttatttctccacttaatttttagtcccaacaca-- |
98 |
Q |
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| T |
8185070 |
cattgttatttacagcgaatgtcaatatcacgagcgcttcacgaactagcttt-----tgtctagtta-ctctccacttaattttttctcccaatacaca |
8185163 |
T |
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| Q |
99 |
-----caagtaccaacactgtttagtgtcca |
124 |
Q |
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| T |
8185164 |
tgtagcaagtaccaacactgcttagtgtcca |
8185194 |
T |
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