View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_low_2 (Length: 696)
Name: NF17140_low_2
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Complemental strand, 19173318 - 19172735
Alignment:
| Q |
18 |
aggttaacaatacagaaatattgaagtaaataagaaacatcgtttcatatgaataaacatacaatttaatcgctaaattatcactctatcacc------- |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
19173318 |
aggttaacaatacagaaatattgaagtaaataagaaacatcatttcatatgaataaacattcaatttaatctctaaattatcactctatcaccaattttg |
19173219 |
T |
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| Q |
111 |
---------tattaaaattaattaaaaggtccgtaaactatgacaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtccctaga |
201 |
Q |
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|||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19173218 |
tccatgaactattaaaattaactaaaaggtccgtaaagtatgagaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtcactagg |
19173119 |
T |
|
| Q |
202 |
taagtcaactgagggaccaaattgatgtatttctcatactttcataaatccatacaaaactgcaagggagttaaatcatcacatccaacattctttcaac |
301 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19173118 |
taagttaactgagggaccaaattgatgtatttctcgtactttcataaacctaaacaaaactgaaagggagttaaatcatcacatccaacattctttcaac |
19173019 |
T |
|
| Q |
302 |
ttggttgctttacttatgtaaatcatgaaccaagattatttactgttataaaaataaagaacatgcagttgaaatgataataatacagttaagtgattat |
401 |
Q |
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| T |
19173018 |
ttggttgctttacttatgtaaatcatgaaccaagattatttactgctacaaaaataaagaacatgcagttgaaattataataatacagttaagtgattat |
19172919 |
T |
|
| Q |
402 |
ttgttaactgattattgctaattgtatttaaccatagttaagcttttctgttatagttaccttttctgttagttcagtttcacattttctgttataacca |
501 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172918 |
ttgttagctgattattgctaattgtatttaaccatagttaagcttttctgttatag-taccttttctgttagttcagtttcacattttctgttataacca |
19172820 |
T |
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| Q |
502 |
actttgttcccattcattt-tatacatatatattgatcagaaccgtgtgaatcacacaaacaaaaacagttataactcaattctg |
585 |
Q |
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| T |
19172819 |
actttgttcccattcatttatacatatatatattgatcagaaccgtgtgaatcacacaaacaaaaacagttatcactcaattctg |
19172735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 324 - 517
Target Start/End: Complemental strand, 19178095 - 19177901
Alignment:
| Q |
324 |
tcatgaaccaagattatttactgttataaa--aataaagaacatgcagttgaaatgataataatacagttaagtgattatttgttaactgattattgcta |
421 |
Q |
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| T |
19178095 |
tcatcaaccaagattctttactgttataaattaagaaacaacatgcaattgaaattataataatacagtcaagtgattagttattaactgattattgtta |
19177996 |
T |
|
| Q |
422 |
attgtatttaaccatagttaagcttttctgttatagttaccttttctgttagttcagtttcacattttctgttataaccaactttgttcccattca |
517 |
Q |
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| T |
19177995 |
attgtatttaaccatagtcaagcttttctgttatagttaacttttctgttagttca-tttcacattttctgttataaccaactttgttcccattca |
19177901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 19178349 - 19178129
Alignment:
| Q |
22 |
taacaatacagaaatattgaagtaaataagaaacatcgtttcatatgaataaacatacaatttaatcgctaaattatcactctatcacc----------- |
110 |
Q |
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|||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
19178349 |
taacaatacaaaaatactgaagtaaataagaaacatcatttcatatgaataaacattcaatttaatcgctaaactatcactctatcacctatttcgtcca |
19178250 |
T |
|
| Q |
111 |
-----tattaaaattaattaaaaggtccgtaaactatgacaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtccctagataag |
205 |
Q |
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||||||||| || ||||| ||||| ||||||||| ||||||||||||||||| | ||||||||||| |||| || |||||||||||||||||| |
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| T |
19178249 |
tgaattattaaaatcaactaaaaagtccggaaactatgagaaatacatcaatatggtacgtaaactatactattgttcattaatttggtccctagataaa |
19178150 |
T |
|
| Q |
206 |
tcaactgagggaccaaattga |
226 |
Q |
| |
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| ||| ||||||||||||||| |
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| T |
19178149 |
ttaaccgagggaccaaattga |
19178129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 637 - 681
Target Start/End: Complemental strand, 19172701 - 19172657
Alignment:
| Q |
637 |
tgttgaaatcagtattcaacagacagaaacaacacacatcatcat |
681 |
Q |
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| T |
19172701 |
tgttgaaatcagtattcaacagacagaaacaacacacatcatcat |
19172657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 6039596 - 6039505
Alignment:
| Q |
148 |
atacatcaatatggtccataaactatactcttgtcgatcaatttggtccctagataagtcaactgagggaccaaattgatgtatttctcata |
239 |
Q |
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||||||||||||| || |||||| || ||| || ||||||||||| |||||| |||||| |||| |||||||||||||||||||||||| |
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| T |
6039596 |
atacatcaatatgatctctaaactctattctcatctttcaatttggtcgctagatcagtcaattgagagaccaaattgatgtatttctcata |
6039505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 29249501 - 29249591
Alignment:
| Q |
110 |
ctattaaaattaattaaaaggtccgtaaactatgacaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtccctaga |
201 |
Q |
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||||||||||| | |||||||||| |||||||||| ||||| |||||| | |||| | ||||||| ||| || |||||||| ||||||||| |
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| T |
29249501 |
ctattaaaattgactaaaaggtccataaactatgagaaata-atcaatgtagtccctcaactataatctcatccatcaatttagtccctaga |
29249591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 12607260 - 12607320
Alignment:
| Q |
110 |
ctattaaaattaattaaaaggtccgtaaactatgacaaatacatcaatatggtccataaac |
170 |
Q |
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|||||||||| || |||||||| | |||||||||| |||||||||||| | |||| ||||| |
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| T |
12607260 |
ctattaaaatcaactaaaaggttcataaactatgaaaaatacatcaatttagtccctaaac |
12607320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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