View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_low_4 (Length: 490)
Name: NF17140_low_4
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 47101 - 47590
Alignment:
| Q |
1 |
tgaagagtagtttactaagtaatagtatgattacaaattaaatctcattgaaacctcaattgagatggtctcttcttgaaatagaatgatactataagag |
100 |
Q |
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| T |
47101 |
tgaagagtagtttactaagtaatagtatgattacaaattaaatctcattgaaacctcaattgagatggtctcttcttgaaatagaatgatactataagag |
47200 |
T |
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| Q |
101 |
tttgtattgttctgaggagtctatctgatcaagacgtgtcttcaaatatggaagattgaaaacaaaattggaagccaatggtacagttgaacattgtgct |
200 |
Q |
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| T |
47201 |
tttgtattgttctgaggagtctatctgatcaagacgtgtcttcaaatatggaagattgaaaacaaaattggaagccaatggtacagttgaacattgtgct |
47300 |
T |
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| Q |
201 |
tctgtattttcacattcacctattacacactctgcagttgatttttgcatatagattttatcttgattggaatgtgaaacatattcattacttaccaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47301 |
tctgtattttcacattcacctattacacactctgcagttgatttttgcatatagattttatcttgattggaatgtgaaacatattcattacttaccaaga |
47400 |
T |
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| Q |
301 |
gccagggtcgcggtggaagtttgtaattgctttctaaccttgactctaaaatatttgtttgacatttatcttgagttgacagtgatagttgttcttgatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47401 |
gccagggtcgcggtggaagtttgtaattgctttctaaccttgactctaaaatatttgtttgacatttatcttgagttgacagtgatagttgttcttgatt |
47500 |
T |
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| Q |
401 |
cttgtccaatgtcgtcctagactttttgccagattctttggatccacaattagagcgattaaatttttctacacaattagttgaatctag |
490 |
Q |
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| T |
47501 |
cttgtccaatgtcgtcctagactttttgtcagattctttggatccacaattagagcgattaaatttttctacacaattagttgaatctag |
47590 |
T |
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