View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17140_low_5 (Length: 484)
Name: NF17140_low_5
Description: NF17140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17140_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 34410417 - 34410888
Alignment:
| Q |
18 |
gaatatgcataccattctttggttctcttctaggatttctaggaggttttgcctttgcaccaacatcatattttgtaagtaaaagcaatgattgaattat |
117 |
Q |
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| T |
34410417 |
gaatatgcataccattctttggttctcttctaggatttctaggaggttttgcctttgcaccaacatcatattttgtaagtaaaaacaatgattgaattat |
34410516 |
T |
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| Q |
118 |
ttactaagttaacgagcataaatttgtttgatct----tatattatgatgattgcagattccatgtatcatatggcttaaactttacaaacctaagagat |
213 |
Q |
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| T |
34410517 |
ttaccaagttaacgagcataaatttgtttgatcttatatatattatgatgattgcagattccatgtatcatatggcttaaactttacaaacctaagagat |
34410616 |
T |
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| Q |
214 |
ttggcttgtcttggataataaattgggtatgat-----------atattatgaaagttctttgatta-ctttttctatg-ttaagtaatttattgaggtt |
300 |
Q |
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| T |
34410617 |
ttggcttgtcttggataataaattgggtatgatattgtgaattgatattatgaaagttctttgattacctttttctatgtttaagtaatttattcaggtt |
34410716 |
T |
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| Q |
301 |
ttaacttgttttattgcattacaggtctgcattgtgcttggcgtcttgttgatggtactagccccaataggttctttgagacaaattattcttcaattca |
400 |
Q |
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| T |
34410717 |
ttaactcgttttattgcattacaggtctgcattgtgcttggcgtcttgttgatggtactagccccaataggttctttgagacaaattattcttcaattca |
34410816 |
T |
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| Q |
401 |
aggattacaagttcttctcatgaactatcaattcaagttattagtcgatagttagtcatagtttctaatttt |
472 |
Q |
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| T |
34410817 |
aggattacaagttcttctcataaactatcaattcaagttattagtcgatagttagtcatagtttctagtttt |
34410888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 38820870 - 38820805
Alignment:
| Q |
177 |
tgtatcatatggcttaaactttacaaacctaagagatttggcttgtcttggataataaattgggta |
242 |
Q |
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| T |
38820870 |
tgtatcatctggcttaaactcaagaaacccaagaaatttggcttgtcttggacaattaattgggta |
38820805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 38821063 - 38821010
Alignment:
| Q |
29 |
ccattctttggttctcttctaggatttctaggaggttttgcctttgcaccaaca |
82 |
Q |
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| T |
38821063 |
ccattctttggttctcttcttggattcctcggagggtttgccttagccccaaca |
38821010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 41380799 - 41380744
Alignment:
| Q |
172 |
ttccatgtatcatatggcttaaactttacaaacctaagagatttggcttgtcttgg |
227 |
Q |
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| T |
41380799 |
ttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttgg |
41380744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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