View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17141_high_10 (Length: 250)
Name: NF17141_high_10
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17141_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 43213749 - 43213532
Alignment:
| Q |
18 |
agttgagttcttaatactttgaatgctttcattcatggctttcttcaaatgtgtcaacatgttgatcatcattttcattttctttttatgtgcaacacct |
117 |
Q |
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| T |
43213749 |
agttgagttcttaatactttgaatgctttcattcatggctttcttcaaatgtgtcaacatgttgatcatcattttcattttctttttatgtgcaacacct |
43213650 |
T |
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| Q |
118 |
attttctcagattcctcctccactacttcaaaagaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttg |
217 |
Q |
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| T |
43213649 |
attttctcagattcctcctccactaattcaaaagaccacttagcaattccaaagcttctggaattagccaaagagcctcaagtttttgattggatggttg |
43213550 |
T |
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| Q |
218 |
atataaggaggaagattc |
235 |
Q |
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|||||||||||||||||| |
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| T |
43213549 |
atataaggaggaagattc |
43213532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 227
Target Start/End: Original strand, 41649903 - 41650083
Alignment:
| Q |
47 |
cattcatggctttcttcaaatgtgtcaacatgttgatcatcattttcattttctttttatgtgcaacacctattttctcagattcctcctccactacttc |
146 |
Q |
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||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||| || ||||||||| || |||||||||||||||||||| ||||| |
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| T |
41649903 |
cattcatggatttcttcaaatatttcaacatgttcatcatcattttcattttcttttcatctgcaacaccaatcttctcagattcctcctccaccacttc |
41650002 |
T |
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| Q |
147 |
aaaagaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttgatataaggag |
227 |
Q |
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| T |
41650003 |
aaatgaccacttatcaatcccaaactttctaaatttatccaaggaacctcaagtttttgatttcatggttgatataaggag |
41650083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 43228273 - 43228076
Alignment:
| Q |
33 |
actttgaatgctttcattcatggctttcttcaaatgtgtcaacatgttgatcatcattttcattttctttttatgtgcaacacctattttctcagattcc |
132 |
Q |
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| T |
43228273 |
actttgaatgcatgtattcatggatttcttcaaatgtttcaacatgttcatcatcattttcattttctttttatctgcaacatcaatcttctcagattcc |
43228174 |
T |
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| Q |
133 |
tc---ctccactacttcaaaagaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttgatataaggag |
227 |
Q |
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| T |
43228173 |
tcctcctccaccacttcaaatgaccacttatcaatcccaaactttctagatttagctaaagagcctaaagtttttgactggatggtttctataaggag |
43228076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 43224443 - 43224267
Alignment:
| Q |
47 |
cattcatggctttcttcaaatgtgtcaacatgttgatcatcattttcattttctttttatgtgcaacacctattttctcagattcctcctccactacttc |
146 |
Q |
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||||||||| ||||||||||||||| || |||| |||||||| ||||||| |||||||| ||| ||||| || ||||||||||| ||||||| | || |
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| T |
43224443 |
cattcatggatttcttcaaatgtgttaagttgttcatcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagt---tc |
43224347 |
T |
|
| Q |
147 |
aaaagaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttgatataaggaggaagattc |
235 |
Q |
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||| | |||| || || || |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43224346 |
aaacg---------caatccccaatttcctggaattagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattc |
43224267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 41654456 - 41654631
Alignment:
| Q |
48 |
attcatggctttcttcaaatgtgtcaacatgttgatcatcattttcattttctttttatgtgcaacacctattttctcagattcctcctccactacttca |
147 |
Q |
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|||||||| |||||||||||||||||| |||| ||| |||||||||||| |||||||| ||| ||||| || |||||||| ||| ||||| | |||| |
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| T |
41654456 |
attcatggatttcttcaaatgtgtcaagttgttcatcgtcattttcatttcctttttatctgctacaccaatcttctcaga---ctcttccaccagttca |
41654552 |
T |
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| Q |
148 |
aaagaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttgatataaggaggaagattc |
235 |
Q |
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|| | |||| || || || |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41654553 |
aatg---------caatccccaacttcctggaattagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattc |
41654631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 43206708 - 43206566
Alignment:
| Q |
82 |
atcatcattttcattttctttttatgtgcaacacctattttctcagattcctcctccactacttcaaaagaccacttagcaataccaaagtttctggaat |
181 |
Q |
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||||||||||||||||||||||| | ||||||||| | |||||||| | ||| ||| |||||||| ||||||||| |||| ||||| ||||| || | |
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| T |
43206708 |
atcatcattttcattttctttttctctgcaacaccagtcttctcagacttctcttcc---acttcaaatgaccacttatcaatcccaaactttctagatt |
43206612 |
T |
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| Q |
182 |
tagccaaagagcctcgagtttttgattggatggttgatataaggag |
227 |
Q |
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|||| ||||||||| ||||||||| ||||||||| ||||||||| |
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| T |
43206611 |
tagctaaagagcctaaagtttttgactggatggtttctataaggag |
43206566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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