View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17141_high_2 (Length: 464)
Name: NF17141_high_2
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17141_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 882844 - 883254
Alignment:
| Q |
1 |
tgcacatgcctatattattcgacccttcttctaaacaaaaacccgacaagaaatcacaagtagtagcaagcagtatcattaatcaaaatgattagagggt |
100 |
Q |
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| T |
882844 |
tgcacatgcctatatt---cgacccttcttctaaacaaaaacccgacaagaaatcacaagtagtagcaagcagtatcattaatcaaaatgattagagggt |
882940 |
T |
|
| Q |
101 |
aatggaaaacaagactaggtcaggttgatgatgatagttggtcacacacaaatgcatctagtgcgttatttattactattatagtttcatggtacaccaa |
200 |
Q |
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| T |
882941 |
aatggaaaacaagactaggtcaggttgatgatgatagttggtcacacacaaatgcatctagtgcgttatttattactattatagtttcatggtacaccaa |
883040 |
T |
|
| Q |
201 |
agtaactaggaggagtcttcgatgctagcaaatacctccaattcattccctgcatatacaattaaaattaggggatcatcccataatttcagtaaattat |
300 |
Q |
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| T |
883041 |
agtaactaggaggagtcttcgatgctagcaaatacctccaattcattccctgcatatactattaaaattaggggatcatcccataatttcagtaaattat |
883140 |
T |
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| Q |
301 |
agtacaaaaattactaattaattagtcttgattaccatcagggtcatagaagaaaactcgtttgatgttgccattagtagtctcaaaagtctcaataccc |
400 |
Q |
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| T |
883141 |
agtacaaaaattactaattaattagtcttgattaccatcagggtcatagaagaaaactcgtttgatgttgccattagtagtctcaaaagtctcaataccc |
883240 |
T |
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| Q |
401 |
ttgttctgtaaatg |
414 |
Q |
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|||| ||||||||| |
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| T |
883241 |
ttgtcctgtaaatg |
883254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 880561 - 880606
Alignment:
| Q |
332 |
ttaccatcagggtcatagaagaaaactcgtttgatgttgccattag |
377 |
Q |
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||||||||||||||| | ||||||||| ||||||| |||||||||| |
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| T |
880561 |
ttaccatcagggtcaaaaaagaaaacttgtttgattttgccattag |
880606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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