View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17141_high_6 (Length: 335)
Name: NF17141_high_6
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17141_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 42903540 - 42903282
Alignment:
| Q |
1 |
gaatgttaggtcattagggccaacnnnnnnnaatcgactaattagagggataggttcaaaatcttagtttggcacgtctaaaatgacaggttaaacaggt |
100 |
Q |
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| T |
42903540 |
gaatgttaggtcattagggccaacttttttgaatggactaattagagggataggttcaaaatcttagtttggcacgtctaaaatgacaggttaaacaggt |
42903441 |
T |
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| Q |
101 |
ctctcggatggggccaacgccggtttgccacctgttataattgatgtagtaatttgattaatgttggtt--nnnnnnnncaaggaagtgttaggtcatta |
198 |
Q |
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| T |
42903440 |
ctgttggatagggctaacaccggtttgccacatgttatagttgatgtagtaatttgattaatgttggttaaaaaaaatacaaggaagtgttaggtcatta |
42903341 |
T |
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| Q |
199 |
tgggagcctgaaagattaatatattgacc-tttttttagtaaatattgtaataagtgag |
256 |
Q |
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| T |
42903340 |
tgggagcctgaaagattaatatattgaccttttttttagtaaatattgtaataagtgag |
42903282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 42903292 - 42903251
Alignment:
| Q |
278 |
taataagtgagttgaatatcacatttaaatttataatattaa |
319 |
Q |
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| T |
42903292 |
taataagtgagttgaatatcacatttaaatttacaatattaa |
42903251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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