View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17141_high_9 (Length: 271)
Name: NF17141_high_9
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17141_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 36846352 - 36846588
Alignment:
| Q |
20 |
ccctaagattataaataagaccatccctcttttccccttactctcacgcacatatattcatcagattttttgagtccattctcttccttcaatttttcac |
119 |
Q |
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| T |
36846352 |
ccctaagat-ataaataagaccatccctcttttccccttactctcacgcacatatattcatcagattttttgagtccattcttttccttcaatttttcac |
36846450 |
T |
|
| Q |
120 |
cgtgtggcctaaagcactaactcttttttctcttgcaagcacttcgtgagatcgtagagtttccgtgctaggaag-aaaaacgcttaaggtaagaaaagg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36846451 |
cgtgtggcctaaagcactaactcttttttctcttgcaagcacttcgtgagatcgtagagtttccgtgctaggaagaaaaaacgcttaaggtaagaaaagg |
36846550 |
T |
|
| Q |
219 |
ttctaaattagatgaattaaaggagtttttgttgttct |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36846551 |
ttctaaattagatgaattaaaggagtttttgttgttct |
36846588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16825375 - 16825347
Alignment:
| Q |
1 |
ataacttgaaacaaacacaccctaagatt |
29 |
Q |
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| T |
16825375 |
ataacttgaaacaaacacaccctaagatt |
16825347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25045639 - 25045611
Alignment:
| Q |
1 |
ataacttgaaacaaacacaccctaagatt |
29 |
Q |
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| T |
25045639 |
ataacttgaaacaaacacaccctaagatt |
25045611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43715329 - 43715297
Alignment:
| Q |
1 |
ataacttgaaacaaacacaccctaagattataa |
33 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
43715329 |
ataacttgaaacaaacacaccctaagagtataa |
43715297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4559609 - 4559641
Alignment:
| Q |
1 |
ataacttgaaacaaacacaccctaagattataa |
33 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
4559609 |
ataacttgaaacaaacacaccctaagactataa |
4559641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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