View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17141_low_10 (Length: 271)
Name: NF17141_low_10
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17141_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 23291098 - 23290971
Alignment:
| Q |
14 |
ttattcttagaatagatctttgacatgttctttttggcttttgtaaagaaataaataaaattaagtttccaatttagttgcgggttcaaagacttgtagc |
113 |
Q |
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| T |
23291098 |
ttattcttagaatagatctttgacatgttctttttggcttttgtaaagaaataaataaaattaagtttccaatttagttgcgggttcaaagacttgtagc |
23290999 |
T |
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| Q |
114 |
ttccacacattcgacaagactccataga |
141 |
Q |
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| T |
23290998 |
ttccacacattcgacaagactccataga |
23290971 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 23290959 - 23290880
Alignment:
| Q |
192 |
atatcacacttgatgcttatattaaacaatattcattttaaaatggagggagtaactttttgggcttatctaatttatct |
271 |
Q |
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| T |
23290959 |
atatcacacttgatgcttatatttaacgatattcattttaaaatggagtgaataactttttgggcttatctaatttatct |
23290880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 35233738 - 35233770
Alignment:
| Q |
213 |
ttaaacaatattcattttaaaatggagggagta |
245 |
Q |
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| T |
35233738 |
ttaaacaatattcattttgaaatggagggagta |
35233770 |
T |
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