View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17141_low_16 (Length: 220)

Name: NF17141_low_16
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17141_low_16
NF17141_low_16
[»] chr7 (7 HSPs)
chr7 (14-213)||(17734464-17734663)
chr7 (14-213)||(17743704-17743903)
chr7 (14-213)||(16720480-16720679)
chr7 (14-213)||(17697494-17697693)
chr7 (14-213)||(17716413-17716612)
chr7 (14-213)||(16729353-16729552)
chr7 (14-213)||(17706425-17706624)
[»] chr3 (1 HSPs)
chr3 (59-124)||(46497386-46497451)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 17734663 - 17734464
Alignment:
Q  14 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17734663 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 17734564  T
Q  114 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt 213  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  17734563 ccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgt 17734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 17743903 - 17743704
Alignment:
Q  14 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 113  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17743903 gagcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 17743804  T
Q  114 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  17743803 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgt 17743704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 16720679 - 16720480
Alignment:
Q  14 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  16720679 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag 16720580  T
Q  114 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt 213  Q
    |||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||    
T  16720579 ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt 16720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 17697693 - 17697494
Alignment:
Q  14 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  17697693 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag 17697594  T
Q  114 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt 213  Q
    |||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||    
T  17697593 ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt 17697494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 17716612 - 17716413
Alignment:
Q  14 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 113  Q
    ||||||||||||||| ||| ||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  17716612 gagcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggag 17716513  T
Q  114 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt 213  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||    
T  17716512 ccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgt 17716413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 16729552 - 16729353
Alignment:
Q  14 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 113  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  16729552 gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag 16729453  T
Q  114 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt 213  Q
    | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||    
T  16729452 ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt 16729353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 17706624 - 17706425
Alignment:
Q  14 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 113  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  17706624 gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag 17706525  T
Q  114 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt 213  Q
    | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||    
T  17706524 ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt 17706425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 46497451 - 46497386
Alignment:
Q  59 ggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat 124  Q
    ||||||||  || |||||||||  ||||||||| | ||||||||| ||||||||||| ||||||||    
T  46497451 ggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgat 46497386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University