View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17141_low_3 (Length: 415)
Name: NF17141_low_3
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17141_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 31843746 - 31843367
Alignment:
| Q |
17 |
atatttaatttataatgcatattcctcaacttctcaaccatttgtgtagatggtatattacatgtacttcatctattattatggtgaagcatctttgtac |
116 |
Q |
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| T |
31843746 |
atatttaatttataatgcatattcctcaacttctcaaccatttgtgtagatggtatattacatgtacttcatctattattatggtgaagcatctttgtac |
31843647 |
T |
|
| Q |
117 |
tttgttttatcccttcccttattcaataaaataagtcctttgctgttaaaaacaaattgcaaccaagaaattagt-aaatataaagttcaataccaacaa |
215 |
Q |
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| T |
31843646 |
tttgttttatcccttcccttattcaataaaataagtcctttgctgttaaaaacaaattgcaaccaagaaattagtaaaatataaagttcattaccaacaa |
31843547 |
T |
|
| Q |
216 |
tggccattgcaagtaaacatcaaagtgatgtatgatataatgagaaagtccatgatattattaattgatgcataccgttaagagtttcgcattagataat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31843546 |
tggccattgcaagtaaacatcaaagtgatgtatgatataatgagaaagtccaagatattattaattgatgtataccgttaagagtttcgcattagataat |
31843447 |
T |
|
| Q |
316 |
gaaagttaggttgtaaatgtgttttgaagtagcagatagttctcatcttataaattggaatgtaagattgagttagattaaatc |
399 |
Q |
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| T |
31843446 |
gaaagt----ttgtaaatgtgttttgaagtagcagatagttctcatcttataaattggaatgtaagattgagttagattcaatc |
31843367 |
T |
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