View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17141_low_5 (Length: 338)
Name: NF17141_low_5
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17141_low_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 15401928 - 15402256
Alignment:
| Q |
10 |
aagaaaatgtaacacgcaagttttatgaataatgaacacttagcaccaaggttttaaattggtggaagtcatgtgacggttcttgacattgaggagaatc |
109 |
Q |
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| T |
15401928 |
aagaaaatgtaacacgcaagttttatgaataatgaacacttagcaccaaggttttaaattggtggaagtcatgtgacggttcttgacattgaggagaatc |
15402027 |
T |
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| Q |
110 |
acgatcaaatgcagctgacgcagactcaatcgtattcacattgcaatttgcaatgaattctcttttatcaaaacctggtctgacacctttattaatacaa |
209 |
Q |
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| T |
15402028 |
acgatcaaatgcagctgacgcagactcaatcgtattcacattgcaatttgcaatgaattctcttttatcaaaacctggtctgacacctttattaatacaa |
15402127 |
T |
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| Q |
210 |
tttactttgttattgttttttagtaatttactctaaactctaggagtatttgattttggagtggagatcagatggaggttagtagtcaaatcgctcgagg |
309 |
Q |
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| T |
15402128 |
tttactttgttattgttttttagtaatttactctaaactctaggactatttgattttggagtggagatcagacggaggttagtagtcaaatcgctcgagg |
15402227 |
T |
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| Q |
310 |
tacaggaagacttagaaaactatataaga |
338 |
Q |
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| T |
15402228 |
tacaggaagacttagaaaactatataaga |
15402256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 333
Target Start/End: Original strand, 15400412 - 15400539
Alignment:
| Q |
202 |
taatacaatttactttgttattgtttt--ttagtaatttactctaaactctaggagtatttgattttggagtggagatcagatggaggttagtagtcaaa |
299 |
Q |
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| T |
15400412 |
taataaaatttactttgttattgttttctttagtaatttactataaa------gagtatgtgattttcgagcggagattagatggaggttagcagtcaaa |
15400505 |
T |
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| Q |
300 |
tcgctcgaggtacaggaagacttagaaaactata |
333 |
Q |
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| T |
15400506 |
tcgctcgaggtagatgaagacttaaaaaactata |
15400539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 15400123 - 15400169
Alignment:
| Q |
142 |
tattcacattgcaatttgcaatgaattctcttttatcaaaacctggt |
188 |
Q |
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| T |
15400123 |
tattcacattgcaatttgcaatgaaatatctcttattaaaacctggt |
15400169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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