View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17141_low_8 (Length: 311)

Name: NF17141_low_8
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17141_low_8
NF17141_low_8
[»] chr4 (1 HSPs)
chr4 (1-297)||(24069319-24069615)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 24069615 - 24069319
Alignment:
Q  1 ttaaaaacaaaaccaaattaccctaattccacattctacatgctagctagaccatattccacagggcagggtactttcgacaattccacagtagctggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24069615 ttaaaaacaaaaccaaattaccctaattccacattctacatgctagctagaccatatttcacagggcagggtactttcgacaattccacagtagctggaa 24069516  T
Q  101 ttttggaatacactaaaccaaatgatcaaacaaataaaaatctccctattctaaaacctgtgcttccagccatcaatgatactaattttgttgctaattt 200  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24069515 ttttagaatacactaaaccaaatgatcaaacaaatttaaatctccctattctaaaacctgtgcttccagtcatcaatgatactaattttgttgctaattt 24069416  T
Q  201 tagtaacaaatttcttagcttaaatagtccaaaataccctgcaaatgtgccaaaaactattgacaaaaactttttctttatcgttggactaggaact 297  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24069415 tagtaacaaatttcttagcttaaatagtccaaaataccccgcaaatgtgccaaaaactattgacaaaaactttttctttatcgttggactaggaact 24069319  T

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