View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17141_low_9 (Length: 279)
Name: NF17141_low_9
Description: NF17141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17141_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 12177548 - 12177289
Alignment:
| Q |
8 |
ccaagaatattattctaacaatgcatttggggcttaaacatatgattaatttaatgttgaaaatgcagtgataagcgagtatgaagggttggcattaatt |
107 |
Q |
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| T |
12177548 |
ccaaaaatattattttaacgatgcatttggggcttaaacatatgattaatttaatctttaaaatgcagtgataagcgagtatgaagggttggcattaatt |
12177449 |
T |
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| Q |
108 |
ttaagagccctataaggtattgtttaattaatatatgaccatatggtacattaattttgatgtaagaataatttagaggcctgcttcacatggtagggtg |
207 |
Q |
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| T |
12177448 |
ttaagagccctataaggtattgtttaattaatatatgaccatatggtacattaattttgatgtaagaataatttagaggcctgcttcacatggtagggtg |
12177349 |
T |
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| Q |
208 |
atggtgattcagacaaaaaccttgttagagtaatggtgagagaatcccagtttaattttg |
267 |
Q |
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| T |
12177348 |
atggtgattcagacaaaaaccttgttagagtaatggtgagagaatcccagtttaattttg |
12177289 |
T |
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