View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17142_low_2 (Length: 358)
Name: NF17142_low_2
Description: NF17142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17142_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 3241309 - 3241642
Alignment:
| Q |
9 |
agcacagacaacttagcaacaatatatgtctatttaagctataatcactctttatatgcaggcatacactggagataaggaaaatttggggaagtgtgaa |
108 |
Q |
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| T |
3241309 |
agcaccgacaacttagcaacaatatatgtctatttaagctataatcactctttatatgcaggcatacactggagataaggaaaatttggggaagtgtgaa |
3241408 |
T |
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| Q |
109 |
caggtgaatggaactttactgcattttactctttttccccctttaaagaaactttttatgtttatactggtctagcattaatgatacaacaaaaaattac |
208 |
Q |
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| T |
3241409 |
caggtgaatggaactttactgcattttactcgttttccccctttaaagaaactttttatgtttatactggtctagcattaatgatacaacaaaaaattac |
3241508 |
T |
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| Q |
209 |
tctatctgtcccatattataagccgtttaaggttttggcacataaattaagaaatgcaattaatatcatatgtttactaaaaaatattctgaacttccct |
308 |
Q |
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| T |
3241509 |
cctatctgtcccatattataagccgtttaaggttttggcacataaattaagaaatgcaattaatatcatatgtttaataaaaaatattctgaacttccct |
3241608 |
T |
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| Q |
309 |
aaactacccataactctttcatattaaaaatatt |
342 |
Q |
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||||||||| | |||| ||||||||||||||||| |
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| T |
3241609 |
aaactaccctttactccttcatattaaaaatatt |
3241642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 45208264 - 45208218
Alignment:
| Q |
68 |
aggcatacactggagataaggaaaatttggggaagtgtgaacaggtg |
114 |
Q |
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| T |
45208264 |
aggcatacactggcgacaaggagagtttggggaagtgtgaacaggtg |
45208218 |
T |
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