View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17143_high_1 (Length: 827)
Name: NF17143_high_1
Description: NF17143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17143_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 14 - 624
Target Start/End: Original strand, 27548730 - 27549338
Alignment:
| Q |
14 |
agaatcaacattctaacatagaaacaaaaagtaaacataggagctgcttgaaaagtcgaattcattgttattattcatcaaacnnnnnnnngcattctca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
27548730 |
agaatcaacattctaacatagaaacaaaaagtaaacataggagctgcttgaaaagtataattcattgttattattcatcaaacaaaaaaa-gcattctca |
27548828 |
T |
|
| Q |
114 |
aaatttatcattcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27548829 |
aaatttatcattcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaac |
27548928 |
T |
|
| Q |
214 |
tattgtcggtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattggttca |
313 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
27548929 |
tat-gtcggtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattggttca |
27549027 |
T |
|
| Q |
314 |
agtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctac |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27549028 |
agtatgagatggaaaacatactacagtcagtgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctac |
27549127 |
T |
|
| Q |
414 |
aaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctccttcgtataagctccagaaccgtaccccac |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27549128 |
aaatcttatagtatccattttctccccacgtctcgccccaggagcttttaacaatccaatacggcttctccttcgtataagctccagaaccgtaccccac |
27549227 |
T |
|
| Q |
514 |
cagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatttatggcaactgcattt |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549228 |
cagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatttatggcaactgcattt |
27549327 |
T |
|
| Q |
614 |
gtgaacatttg |
624 |
Q |
| |
|
||||||||||| |
|
|
| T |
27549328 |
gtgaacatttg |
27549338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 306 - 624
Target Start/End: Complemental strand, 27945701 - 27945371
Alignment:
| Q |
306 |
ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27945701 |
ttggttcaagtatgagatggaaaacatactactgtcactgagtattagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
27945602 |
T |
|
| Q |
406 |
tcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctc------cttcgtat------aa |
493 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||| | |
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|
| T |
27945601 |
tcccctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctcca |
27945502 |
T |
|
| Q |
494 |
gctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccg |
593 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||| |
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|
| T |
27945501 |
gctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgtctgcatgtataccg |
27945402 |
T |
|
| Q |
594 |
catttatggcaactgcatttgtgaacatttg |
624 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||| |
|
|
| T |
27945401 |
cgtttattgcagctgcatttgtgaacatttg |
27945371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 46 - 309
Target Start/End: Complemental strand, 27437508 - 27437247
Alignment:
| Q |
46 |
aaacataggagctgcttgaaaagtcgaattcattgttattattcatcaaacnnnnnnnngcattctcaaaatttatcattcttatgataattacatttcc |
145 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
27437508 |
aaacataggagctacttgaaaagtcgaattcattgtcattattcatcaaacgaaaaat-gcatagtcaaaatctatcatttttatgataattacatttcc |
27437410 |
T |
|
| Q |
146 |
aatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactattgtcggtctcctacaatagtgtgagcttt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||| |
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|
| T |
27437409 |
tatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaacta-tgccagtctccaacaatagtgtgagcttt |
27437311 |
T |
|
| Q |
246 |
acaagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattgg |
309 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
27437310 |
acaagcgagacattatgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattgg |
27437247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 306 - 624
Target Start/End: Complemental strand, 27437209 - 27436879
Alignment:
| Q |
306 |
ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
405 |
Q |
| |
|
||||| || ||||||||| |||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27437209 |
ttggtacatgtatgagatagaaatcatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
27437110 |
T |
|
| Q |
406 |
tcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctc------cttcgtat------aa |
493 |
Q |
| |
|
||| || |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||| | |
|
|
| T |
27437109 |
tcctctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctcca |
27437010 |
T |
|
| Q |
494 |
gctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccg |
593 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||| |
|
|
| T |
27437009 |
gctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgtctgcatgtataccg |
27436910 |
T |
|
| Q |
594 |
catttatggcaactgcatttgtgaacatttg |
624 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||| |
|
|
| T |
27436909 |
cgtttattgcagctgcatttgtgaacatttg |
27436879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 27946023 - 27945763
Alignment:
| Q |
20 |
aacattctaacatagaaacaaaaagtaaacataggagctgcttgaaaagtcgaattcattgttattattcatcaaacnnnnnnnngcattctcaaaattt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
27946023 |
aacattctaacatagaaacaaaaagtaaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaat-gccttctcaaaattt |
27945925 |
T |
|
| Q |
120 |
atcattcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctact-aacagtaaactattg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| || || | ||||||||||||| |
|
|
| T |
27945924 |
atcattcttatgataattacatttccaatctctgtagggtctttaaaatttgataagatatctcaagttcaaaatgaatgtagtaaacagtaaactatca |
27945825 |
T |
|
| Q |
219 |
tcggtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcg |
280 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
27945824 |
tcagtctcctataatagtgtgagctcaacaagtgagacattatgtgctggaagacatcttcg |
27945763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 676 - 813
Target Start/End: Original strand, 27549390 - 27549527
Alignment:
| Q |
676 |
gttcagatttttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgcc |
775 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549390 |
gttcagattgttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgcc |
27549489 |
T |
|
| Q |
776 |
gccaccgatcgtgcaatgtttgtcttgtaataagtata |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549490 |
gccaccgatcgtgcaatgtttgtcttgtaataagtata |
27549527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 362 - 622
Target Start/End: Complemental strand, 26766481 - 26766209
Alignment:
| Q |
362 |
gcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttt |
461 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
26766481 |
gcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttt |
26766382 |
T |
|
| Q |
462 |
taacaatccaatacggcttctcctt------------cgtataagctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagt |
549 |
Q |
| |
|
||| |||||||| ||||||||||| || ||| |||||||| || || |||||||| || ||||||||||| || ||| ||| || | |
|
|
| T |
26766381 |
taattatccaatatggcttctccttcaacctaataggcgaataggctccagatccatatcccaccagtaacactccatgatctagtctctttgagcatat |
26766282 |
T |
|
| Q |
550 |
gtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatttatggcaactgcatttgtgaacatt |
622 |
Q |
| |
|
|||||| || ||||| ||||| ||||| || ||||| ||| | ||||| | |||||||||||||||| ||||| |
|
|
| T |
26766281 |
gtatggacatgatactcctccaacgtacgtttgcatatatacggcattcaaggcaactgcatttgtgcacatt |
26766209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 685 - 813
Target Start/End: Complemental strand, 27945319 - 27945191
Alignment:
| Q |
685 |
tttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgccgccaccgat |
784 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||| | |||||||| || ||||||| ||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27945319 |
tttagagtattactgaccagcaagaggtccatgtttaacgagattggcggcgatttggttgtcatcaaccgaaatagaactgaaatttgccgccaccgat |
27945220 |
T |
|
| Q |
785 |
cgtgcaatgtttgtcttgtaataagtata |
813 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |
|
|
| T |
27945219 |
cgtgcagtgtttgtcttataataagtata |
27945191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 685 - 813
Target Start/End: Complemental strand, 27436827 - 27436699
Alignment:
| Q |
685 |
tttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgccgccaccgat |
784 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||| | |||||||| | ||||||| ||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27436827 |
tttagagtattactgaccagcaagaggtccatgtttaacgagattggcggtgatttggttgtcatcaaccgaaatagaactgaaatttgccgccaccgat |
27436728 |
T |
|
| Q |
785 |
cgtgcaatgtttgtcttgtaataagtata |
813 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |
|
|
| T |
27436727 |
cgtgcagtgtttgtcttataataagtata |
27436699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 27504097 - 27504035
Alignment:
| Q |
247 |
caagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattgg |
309 |
Q |
| |
|
||||| ||| |||||||| |||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
27504097 |
caagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattgg |
27504035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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