View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17143_high_8 (Length: 212)
Name: NF17143_high_8
Description: NF17143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17143_high_8 |
 | |
|
| [»] chr1 (8 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2578817 - 2578606
Alignment:
| Q |
1 |
actaattataatattctctctctttgctcattcaacattttcacatgattgcgcttcatgcaaaccaactccaacaagtcctcctccaccttcaacaaca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
2578817 |
actaattataatattttctctctttgctcattcaacattttcacatgattgcgcttcatgcaaaccaactccaattagtcctcctccaccttcaaaaaca |
2578718 |
T |
|
| Q |
101 |
cccaaggcttgtcctccaccaccttcaacaacgcctaaggctagccctccacctccatcaactacggctagccctccacctaaggctagtactccacctc |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2578717 |
ccaaaggcttgtcctccaccaccttcaacaacgcctaaggctagccctccacctccatcaactacggctagccctccacctaaggctagtactccacctc |
2578618 |
T |
|
| Q |
201 |
cttcaacgccta |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2578617 |
cttcaacgccta |
2578606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2600182 - 2600029
Alignment:
| Q |
1 |
actaattataatattctctctctttgctcattcaacattttcacatgattgcgcttcatgcaaaccaactccaacaagtcctcctccaccttcaacaaca |
100 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||||||||||| ||| ||| | ||||||||||||||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
2600182 |
actaattatattattttctctccttgcttattcaacattttcaaatgcttgtggttcatgcaaaccaactccaccaagtccacctccaccttcaaaaaca |
2600083 |
T |
|
| Q |
101 |
cccaaggcttgtcctccaccaccttcaacaacgcctaaggctagccctccacct |
154 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
2600082 |
ccaaaggcttgtcctccaccaccttctacaacacctaaggctagccctccacct |
2600029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 2578614 - 2578528
Alignment:
| Q |
129 |
caacgcctaaggctagccctccacctccatcaa---ctacggctagccctccacctaaggctagtactccacctccttcaacgccta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2578614 |
caacgcctaaggctagccctccacctccgtcaatgcctacggctagccctccacctaaggctagtactccacctccttcaacgccta |
2578528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 2592398 - 2592279
Alignment:
| Q |
1 |
actaattataatattctctctctttgctcattcaacattttcacatgattgcgcttcatgcaaaccaactccaacaagtcctcctccaccttcaacaaca |
100 |
Q |
| |
|
|||||||||| |||| |||||| || || |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2592398 |
actaattatattattttctctcctttcttattcaacattttcacatgcttgtggttcatgcaaaccaactccaacaagtcctccaccaccttctacaaca |
2592299 |
T |
|
| Q |
101 |
cccaaggcttgtcctccacc |
120 |
Q |
| |
|
|| |||||| | |||||||| |
|
|
| T |
2592298 |
cctaaggctagccctccacc |
2592279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 2608678 - 2608607
Alignment:
| Q |
2 |
ctaattataatattctctctctttgctcattcaacattttcacatgattgcgcttcatgcaaaccaactcca |
73 |
Q |
| |
|
||||||||| | || |||||| ||||| |||||||||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
2608678 |
ctaattatattgttttctctccttgcttattcaacattttcacatgcttgtggttcatgcaaaccaactcca |
2608607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 2592321 - 2592278
Alignment:
| Q |
111 |
gtcctccaccaccttcaacaacgcctaaggctagccctccacct |
154 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
2592321 |
gtcctccaccaccttctacaacacctaaggctagccctccacct |
2592278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 2592293 - 2592255
Alignment:
| Q |
166 |
ggctagccctccacctaaggctagtactccacctccttc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2592293 |
ggctagccctccacctaaggctagtactccaccaccttc |
2592255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 2578519 - 2578482
Alignment:
| Q |
113 |
cctccaccaccttcaacaacgcctaaggctagccctcc |
150 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
2578519 |
cctccacctccttcaacaacgcctacggctagccctcc |
2578482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University