View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17143_low_11 (Length: 210)
Name: NF17143_low_11
Description: NF17143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17143_low_11 |
 | |
|
| [»] scaffold0570 (2 HSPs) |
| | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 23353923 - 23354100
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23353923 |
aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
23354022 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23354023 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcg-ctcgaaagctaagaaaaacgtcatatt |
23354100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 23435491 - 23435669
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23435491 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttcttt |
23435590 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23435591 |
cggctcagagcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcgaaagctaagaaaaacgtcatatt |
23435669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 23480783 - 23480961
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
23480783 |
aatagatgcatgtgacttctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagcttattgttgtctataaaggtttcaactttcttt |
23480882 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23480883 |
cggctcagagcatcataaagatggctggtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt |
23480961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 23449293 - 23449471
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
23449293 |
aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctccttttcgaagctcattgttgtctataaatgtttcaactttcttt |
23449392 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||| | |||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23449393 |
cggctcaaagcatcataaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt |
23449471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 23465426 - 23465604
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23465426 |
aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttcttt |
23465525 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
23465526 |
cggctcagagcgtcgtaaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacctcatatt |
23465604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 23501056 - 23501234
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23501056 |
aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttcttt |
23501155 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
23501156 |
cggctcagagcgtcgtaaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaatgtcatatt |
23501234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 23474443 - 23474613
Alignment:
| Q |
25 |
catgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttag |
124 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
23474443 |
catgtgactcctcaatggctctgatgagtgctggcgatatcttatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcggctcag |
23474542 |
T |
|
| Q |
125 |
agcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23474543 |
agcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcgaaagctaagaaaaacgtcatatt |
23474613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 23406772 - 23406950
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||| |
|
|
| T |
23406772 |
aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaagattttaattttcttt |
23406871 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
23406872 |
cggctcagagcgtcataaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacttcatatt |
23406950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 23441911 - 23442081
Alignment:
| Q |
25 |
catgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttag |
124 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
23441911 |
catgtgactcctcaatggctctgatgagtgctggcgatatcttatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcggctccg |
23442010 |
T |
|
| Q |
125 |
agcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23442011 |
agcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcgaaagctaagaaaaacgtcatatt |
23442081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 23388422 - 23388590
Alignment:
| Q |
27 |
tgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttagag |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
23388422 |
tgtgactcctcaatggctttgatgagtgctggtgagatctcatctcctttttcaagctcattgttgtctataaaggtttcaactttttttcggctcagag |
23388521 |
T |
|
| Q |
127 |
catcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
23388522 |
tatcataaagatggctcgtgaagtttctgcgagtatcatcacctcgaaagctaagaaaaacgtcatatt |
23388590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 23456065 - 23456235
Alignment:
| Q |
25 |
catgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttag |
124 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| || | |
|
|
| T |
23456065 |
catgtgactcctcaatggttttgatgagtgttggtgagatctcatctcctttttgaaggtcattgttgtctatgaaggtttcaactttctttcgactcaa |
23456164 |
T |
|
| Q |
125 |
agcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23456165 |
agcatcataaagatggcttgtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt |
23456235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 21087414 - 21087570
Alignment:
| Q |
21 |
gatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggc |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| | ||||| ||||||||||| ||||| |||||||||||||||||||| ||| | ||| ||| |
|
|
| T |
21087414 |
gatgcatgtgactcttcaatggctttgatgagttctggtgtgatcttatctccttttttaagcttattgttgtctataaaggtttgaacattattttggc |
21087513 |
T |
|
| Q |
121 |
ttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagc |
177 |
Q |
| |
|
| |||||||||||||||||||| |||| |||| |||| |||||||| |||||||||| |
|
|
| T |
21087514 |
tcagagcatcataaagatggcttgtgatgtttttgcgagtatcctcacctcgaaagc |
21087570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 36025503 - 36025657
Alignment:
| Q |
30 |
gactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttagagcat |
129 |
Q |
| |
|
|||| |||||| |||||||| ||||||| ||||||||| |||||||||| ||||||||||| |||||||| ||| |||| |||| ||| ||||| | |
|
|
| T |
36025503 |
gacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagctt |
36025599 |
T |
|
| Q |
130 |
cataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaac |
187 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||| || |||||||| | |||||| |
|
|
| T |
36025600 |
cataaagatggcttgtgaagtttctacgagtatcctcaccacgaaagctgataaaaac |
36025657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 36004748 - 36004900
Alignment:
| Q |
36 |
tcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttagagcatcataaa |
135 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||| |||||||||| ||||||||||| |||||||| ||| || | |||| ||| ||||| ||||||| |
|
|
| T |
36004748 |
tcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataattttctt---gctcagagcttcataaa |
36004844 |
T |
|
| Q |
136 |
gatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtca |
191 |
Q |
| |
|
||||||| ||||| ||||| | |||||||| || | |||||||| |||||||||| |
|
|
| T |
36004845 |
gatggcttgtgaactttctaccagtatcctcaccacaaaagctaataaaaacgtca |
36004900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 36034305 - 36034385
Alignment:
| Q |
20 |
agatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||| ||| ||||||||| |
|
|
| T |
36034305 |
agatgcatctgactcctcaatggctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcgtctataaa |
36034385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 36017393 - 36017460
Alignment:
| Q |
18 |
atagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctc |
85 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||| |
|
|
| T |
36017393 |
atagatgcatctgactcctcaatggctttgatcagtgctgatgagatctcgtctcctttttcaagctc |
36017460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 21088598 - 21088666
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctc |
85 |
Q |
| |
|
||||||| || ||||||||||||| |||| ||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
21088598 |
aatagatacacgtgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctc |
21088666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 35766262 - 35766095
Alignment:
| Q |
25 |
catgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttag |
124 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| |||| ||| | |||||||||| |||| ||| ||||||| | ||||||||| ||||| || | | |
|
|
| T |
35766262 |
catgtgactcttcaatggctgtgatgagtgatggccctatcccctctcctttttcaagcc---tgtagtctatatatgtttcaactttcttttggttcaa |
35766166 |
T |
|
| Q |
125 |
agcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
|| ||| |||||||||| |||| ||| ||| ||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
35766165 |
tgcttcacaaagatggcttgtgatgttgtcgcgagtatcttcacctcgaaagctaagaaaaacatcatatt |
35766095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 36009789 - 36009838
Alignment:
| Q |
29 |
tgactcctcaatggctttgatgagtgctggcgagatctcatctccttttt |
78 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||||||||||||| |
|
|
| T |
36009789 |
tgactcctcaatggctttgattagtgatgatgatatctcatctccttttt |
36009838 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 9740 - 9562
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
9740 |
aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtccataaaggtttcaattttcttt |
9641 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
9640 |
cggctcagagcatcataaagatggcttgttaagtttctgcgagtatcctcacctcgaaagctaagaaaaatgtcatatt |
9562 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 3288 - 3153
Alignment:
| Q |
30 |
gactcctcaatggctttgatgagtg-ctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttagagca |
128 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||| ||||||| ||||| |||||||| ||||||||| |||||||||| | |||| | || || || |
|
|
| T |
3288 |
gactcctcaatggctttgatggctggctggtgagatatcatctctttttttaagctcat-gttgtctatgaaggtttcaagtttcttgcattttggaaca |
3190 |
T |
|
| Q |
129 |
tcataaagatggctcgtgaagtttctgcgggtatcct |
165 |
Q |
| |
|
|| ||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
3189 |
tcgtaaagatggcttgtgaggtttctgcgagtatcct |
3153 |
T |
|
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Target: scaffold0201 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 13600 - 13778
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
13600 |
aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtccataaaggtttcaattttcttt |
13699 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
||| | |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
13700 |
cggatcagagcatcataaagatggcttctgaagtttctgcgaatatcctcacctcgaaagctaagaaaaacatcatatt |
13778 |
T |
|
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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 12894703 - 12894536
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtcttt |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||| || |||||||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
12894703 |
aatagatgcatatgactcctcaatggctttgatcaatgctgaggatatctcatctcctttttgaagctcattgtcatctataaaggttataactttctt- |
12894605 |
T |
|
| Q |
117 |
cggcttagagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaac |
187 |
Q |
| |
|
||| | ||||||||||||||| || |||||| |||| || |||||||| || |||||||| | |||||| |
|
|
| T |
12894604 |
--gctcaaagcatcataaagatgacttgtgaagcttctacgagtatcctcaccgcgaaagcttataaaaac |
12894536 |
T |
|
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Target: scaffold0022 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 167630 - 167552
Alignment:
| Q |
17 |
aatagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtct |
95 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
167630 |
aatagatgcatgttactcctcaatggctttgatgagtgttggcgagatctcatctcctttttgaagctcagtgttgtct |
167552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 167548 - 167476
Alignment:
| Q |
123 |
agagcatcataaagatggctcgtgaagtttctgcgggtatcctcgcctcgaaagctaagaaaaacgtcatatt |
195 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
167548 |
agagaatcataaagatggcttgtgaagtttctgcgagtatcctcacctcgaaagctaagaaacacatcatatt |
167476 |
T |
|
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 16124907 - 16124989
Alignment:
| Q |
18 |
atagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaa |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
16124907 |
atagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaa |
16124989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 16127060 - 16127142
Alignment:
| Q |
18 |
atagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaa |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
16127060 |
atagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaa |
16127142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 16334744 - 16334662
Alignment:
| Q |
18 |
atagatgcatgtgactcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaa |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
16334744 |
atagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgttgtcatctataaa |
16334662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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