View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17143_low_3 (Length: 730)
Name: NF17143_low_3
Description: NF17143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17143_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 297 - 713
Target Start/End: Original strand, 16087825 - 16088229
Alignment:
| Q |
297 |
acaatatcaatattgctttaaaaatgaataaatacacaagtttaatcttatgcccctttcaaaagtttttagacatataatgagagcttggatagattat |
396 |
Q |
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| T |
16087825 |
acaatatcaatattgctttaaaaatgaataaatacacaagtttaagcttatgcccctttcaaaagtttttaaacatataatgagagcctggatagattat |
16087924 |
T |
|
| Q |
397 |
ttctttgatattgcagagtcaagggtagctattaactacaaacaataaggtctcatgacccttattttgcttttcaaatgaatgtgagaatttacaaatt |
496 |
Q |
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| T |
16087925 |
ttctttgatattgcagagtcaagggcagctattaagtacaaacaataaggtctcatgacccttattttgcttttcaaatgaatgtgagaatttacaaatt |
16088024 |
T |
|
| Q |
497 |
gcaataaacaagtatgcgaaagtatgtgaaagtggatgaattttgtgttcagacctaatttcttatttttgaacaaggtccagaccttatttctagttag |
596 |
Q |
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| T |
16088025 |
gcaatatac----------aagtatgtgaaagtggatgaattttgtgtccagaccttatttcttttttttgaacaaggtccagaccttatttctacttag |
16088114 |
T |
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| Q |
597 |
attgaatctctaattcattagaaaaagcgcaatttaatgttttcttaccatttaaaagtttgaagtcccatatccaatagttttatgtgatttttagtct |
696 |
Q |
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| T |
16088115 |
attgaatctccaattcattagaaaaa--gcaatttaatgttttcttaccatttaaaagtttgaagtcccatatcgaatagttttatgtgattttcagtct |
16088212 |
T |
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| Q |
697 |
ttattatacggatgtgt |
713 |
Q |
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| T |
16088213 |
ttattatatggatgtgt |
16088229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 16087545 - 16087756
Alignment:
| Q |
17 |
cataggcttacatagaactgaagaaggtaaacaatctatggtaacaatgtgtggtatacaatccagagttttctctatctaaatcctatcatgatcaagt |
116 |
Q |
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| T |
16087545 |
cataggcttacatagaactgaagaaggtaaacaatctatggtaacaatgtgtggtatacaatccagagttttctctatctaaatcctatcatgatcaagt |
16087644 |
T |
|
| Q |
117 |
aaaacaaatttagcttattagaaatgattaacttggtttgcatttctacaaacaatggcaactaaaagaagaaaaaatgtggaggaatgacatgtaaatc |
216 |
Q |
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| T |
16087645 |
aaaacaaatttagcttattagaaatgattaacttggtttgcatttctacaaacaatggaaactaaaagaagaaaaaatgtgaaggaatcacttgtaaatc |
16087744 |
T |
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| Q |
217 |
gtcaacaaattg |
228 |
Q |
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| T |
16087745 |
gtcaataaattg |
16087756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 7782141 - 7782326
Alignment:
| Q |
17 |
cataggcttacatagaactgaagaaggtaaacaatctatggtaacaatgtgtggtatacaatccagagttttctctatctaaatcctatcatgatcaagt |
116 |
Q |
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||||||||| |||| || ||||||||||||||||| ||||| |||||| |||| |||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
7782141 |
cataggctttcatacaattgaagaaggtaaacaatttatggcaacaatttgtgtaatacaatccatagttttctctatctaaatcctatcattatcaagc |
7782240 |
T |
|
| Q |
117 |
aaaacaaatttagcttattagaaatgattaacttggtttgcatttctacaaacaatggcaactaaaagaag-aaaaaatgtggaggaat |
204 |
Q |
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|||||||||||||| |||||||| ||||||| ||| |||||||| ||| || ||||||| | |||| ||||||||||||||||| |
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| T |
7782241 |
aaaacaaatttagc---gaagaaatgagtaacttgatttcaatttctaccaacgatagcaactataggaagaaaaaaatgtggaggaat |
7782326 |
T |
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