View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17143_low_4 (Length: 703)
Name: NF17143_low_4
Description: NF17143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17143_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 108 - 615
Target Start/End: Complemental strand, 13317851 - 13317346
Alignment:
| Q |
108 |
gcccttttacaatgtaaatgtgtatatatctaggtcatgaaatcctctnnnnnnntgtagatcatgaataatgagtaactgtaaaaattataaagtcatt |
207 |
Q |
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| T |
13317851 |
gcccttttacaatgtaaatgt--atgtatctaggtcatgaaatcctctaaaaaaatgtagatcatgaataatgagcaactgtaaaaattataaaatcatt |
13317754 |
T |
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| Q |
208 |
tatttattggacacatggaaatgaaagtaaaacatggtcaaacgtgaattcacacaatattctattctatgttactataatttgtatgatatgactgcta |
307 |
Q |
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| T |
13317753 |
tatttattggacacatggaaatgaaagtaaaacatggtcaaacgtgaattcacacaatattctattctatgttactataatttgtatgatatgactgcta |
13317654 |
T |
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| Q |
308 |
ccagaaactagacaaccaatataatttcagaaagcctagatgcatgtatgatagacacaattgaagtactaactacatggtacaaacatgatg-nnnnnn |
406 |
Q |
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| T |
13317653 |
ccagaaactagacaaccaatataatttcagatcgcctagatgcatgtatgatagacacaattgaagtactaagtacatggtacaaacatgatgaaaaaaa |
13317554 |
T |
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| Q |
407 |
ngagtacgttggtacaagtaatgtgcacaattggaattccacatgtgcatgtatctttttctcctttaattttcgttatcatttaaacattgtgatcagg |
506 |
Q |
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| T |
13317553 |
agagtacgttggtacaagtaatgtgcacaattggaattccacatgtgcatgtatctttttctcctttaattttcgttaccatttaaacattgtgatcagg |
13317454 |
T |
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| Q |
507 |
atttgaacattagttcgccacattataagagattaaaatgtgtttattgtagtttcgtcatttctttttagttgcataatatataacgggtttatattta |
606 |
Q |
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| T |
13317453 |
atttgaacattagttcgccacattacaagagattaaaatgtgtttattgtagtttcgtcatttctttttagtcgcataatat-taacgggtgtatattta |
13317355 |
T |
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| Q |
607 |
atgtgaaaa |
615 |
Q |
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| T |
13317354 |
atgtgaaaa |
13317346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 606 - 686
Target Start/End: Complemental strand, 13317318 - 13317238
Alignment:
| Q |
606 |
aatgtgaaaaatatttcatgtatctatatggttaaataaataaaccagatgagttgaggttaggttatgtacctcaatgtt |
686 |
Q |
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| T |
13317318 |
aatgtgaaaagtatttcatgtatctatatggttaaataaataaaccagatgagttgaggttaggttatgtacctcaatgtt |
13317238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13317958 - 13317896
Alignment:
| Q |
1 |
gctaaaatctctcacccttttttcttaattt-aaaaaagctttatagacttattgtgaaagctg |
63 |
Q |
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| T |
13317958 |
gctaaaatctctcacccttttt-cttaattttaaaaaagctttataaacttattgtgaaagctg |
13317896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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