View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17143_low_6 (Length: 304)
Name: NF17143_low_6
Description: NF17143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17143_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 4955203 - 4955468
Alignment:
| Q |
24 |
ccaaagacgcttcacttttctactttgactttctccttcaagacaatggtcccattcatttaaggaaggattgaaattctaacatgagcattcattcaca |
123 |
Q |
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| T |
4955203 |
ccaaagacgcttcacttttctactttgactttctccttcaagacaatggtcccattcatttaaggaaggattgaaattctaacatgagcattcattcaca |
4955302 |
T |
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| Q |
124 |
cctaacactttgtctttaattaggcaccgccaatcatgtagttatactttagaatctt--nnnnnnnnnnnnnnnnnnnctttagaaatatacaaataca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4955303 |
cctaacactttgtctttaattaggcaccgccaatcatgtagttatactttagaatcttaaaaaaaaaaaaaaaaaaatactttagaaatatacaaataca |
4955402 |
T |
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| Q |
222 |
ctcttacgataaacattttgttggtggcggtaggagtttgaaccttgcatatattatacgttgttc |
287 |
Q |
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|||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4955403 |
ctctcacaataaacattttgttgatggcggtcggagtttgaaccttgcatatattatacgttgttc |
4955468 |
T |
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