View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17143_low_9 (Length: 214)
Name: NF17143_low_9
Description: NF17143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17143_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 36810559 - 36810741
Alignment:
| Q |
19 |
ttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgct |
118 |
Q |
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| T |
36810559 |
ttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgct |
36810658 |
T |
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| Q |
119 |
gatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctttgct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |
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| T |
36810659 |
gatttggtgtctataaacgtcagcggttgttaccagctcacctattcatccttctttgcactccttaggaactttcatttgct |
36810741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 27005308 - 27005491
Alignment:
| Q |
18 |
attatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgc |
117 |
Q |
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| T |
27005308 |
attatctactatcaaggtctcgttttctacagcatctagatcttcaatttgcaacttttttgaatgatcagggtatcactgacttgtctgtttatcttgc |
27005407 |
T |
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| Q |
118 |
tgatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctttgct |
201 |
Q |
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| T |
27005408 |
tgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtcctttgct |
27005491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 33714403 - 33714577
Alignment:
| Q |
27 |
tgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggt |
126 |
Q |
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||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||| | |||||||| ||| || || ||||| |||||| || |
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| T |
33714403 |
tgtcaaattgtcgatctctgcagcatctagatcttcaatgtgcaaagtttttgaatgatcagcatttcaatgagctgtgtgcatttcttggtgatttagt |
33714502 |
T |
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| Q |
127 |
gtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctttgct |
201 |
Q |
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||||||||| || || |||||| || | |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33714503 |
gtctataaatgtgagtggttgtgacgacctcaccaattcagccttctttgcactccttaggaactgtcctttgct |
33714577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 36876119 - 36875948
Alignment:
| Q |
27 |
tgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggt |
126 |
Q |
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||||||||| | ||||||||| | |||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || || ||||| |||||||| |
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| T |
36876119 |
tgtcaaagtcttcatttctacaacatctagatcttcaagctgcaatgtttttgaatgatcatcgtatcaatgagttgtgtgcatttcttggcgatttggt |
36876020 |
T |
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| Q |
127 |
gtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtccttt |
198 |
Q |
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| T |
36876019 |
gtctataaacgtcaatggttgtgacaagctcaccaatgcagccttctttgcacttcttaggaattgtccttt |
36875948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 33708568 - 33708742
Alignment:
| Q |
27 |
tgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggt |
126 |
Q |
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||||||||||||||| ||| |||| ||||||| ||||| |||||||||||||||||||| ||| |||||| | ||| || || ||||| |||||| || |
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| T |
33708568 |
tgtcaaagtgtcgatctctgcagcatctagatattcaacgtgcaaagtttttgaatgatcgtcgtttcaatgtgctgtgtgcatttcttggtgatttagt |
33708667 |
T |
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| Q |
127 |
gtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctttgct |
201 |
Q |
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||||||||| || || |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33708668 |
gtctataaatgtgagtggttgtgacaagctcaccaattcagccttctttgcactccttaggaactgtcctttgct |
33708742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 33396985 - 33396885
Alignment:
| Q |
101 |
ttgtctgtatatcttgctgatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctttgc |
200 |
Q |
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|||| ||||| ||||| ||||||||||||||||||| ||| |||||| || |||||| | || ||||||| ||||||||||||| ||| |||||||||| |
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| T |
33396985 |
ttgtgtgtatttcttggtgatttggtgtctataaacctcaatggttgtgacaagctcaacaatgcagccttatttgcactccttaagaattgtcctttgc |
33396886 |
T |
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| Q |
201 |
t |
201 |
Q |
| |
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| |
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| T |
33396885 |
t |
33396885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 33093481 - 33093539
Alignment:
| Q |
27 |
tgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgat |
85 |
Q |
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||||||||||| ||||| | |||| |||| |||||||| |||||||||||||||||||| |
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| T |
33093481 |
tgtcaaagtgtagatttgtgcagcatctaaatcttcaaaatgcaaagtttttgaatgat |
33093539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 18723889 - 18724010
Alignment:
| Q |
27 |
tgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggt |
126 |
Q |
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||||||||||||||||||| || | |||||||||| || |||||| ||||||||| || ||| |||||||||||| ||||| ||||| |||||| || |
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| T |
18723889 |
tgtcaaagtgtcgatttctgcaacatctagatctttaaaatgcaatctttttgaataattgtcgtttcaatgagttgtatgtatttcttgatgatttcgt |
18723988 |
T |
|
| Q |
127 |
gtctataaacgtcagcggttgt |
148 |
Q |
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||||||||| || || |||||| |
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| T |
18723989 |
gtctataaatgtgagtggttgt |
18724010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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