View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17144_high_1 (Length: 457)
Name: NF17144_high_1
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_high_1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 31945201 - 31945657
Alignment:
| Q |
1 |
attcattctctaccaaagttactcaaagaaggagaagaaaaagtcaaatagccagaaaaaattctcctaattctcaaggtataaagcttagagtgaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945201 |
attcattctctaccaaagttactcaaagaaggagaagaaaaagtcaaatagccagaaaaacttctcctaattctcaaggtataaagcttagagtgaattc |
31945300 |
T |
|
| Q |
101 |
accaaaacttgttagcnnnnnnnttcaagcatgtgcaagaaagagtatttcaaagaatgatgcagggtttgtagatggatttgcagttgttaagtcttca |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945301 |
accaaaaattgttagcaaaaaaattcaagcatgtgcaagaaagagtatttcaaagaatgatgcagggtttgtagatggatttgcagttgttaagtcttca |
31945400 |
T |
|
| Q |
201 |
attgatccaataagtgatttcaaagaatcaatggtggagatgattgtggagaataatataagggaatcaaaggatttggaggatttacttgcttgctatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945401 |
attgatccaataagtgatttcaaagaatcaatggtggagatgattgtggagaataatataagggaatcaaaggatttggaggatttacttgcttgctatc |
31945500 |
T |
|
| Q |
301 |
tttctcttaattcaagtgaatatcatgatgttatagttaaagcttttgagcaaatttggtatgacatggcccaacttagaatgtaaagatcttattattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31945501 |
tttctcttaattcaagtgaatatcatgatgttatagttaaagcttttgagcaaatttggtatgacatggctcaacttagaatgtaaagatcttattattt |
31945600 |
T |
|
| Q |
401 |
tcaatgcatgtttataagtcttgtaattaattacaaccactctatggattaaacttc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945601 |
tcaatgcatgtttataagtcttgtaattaattacaaccactctatggattaaacttc |
31945657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 9948924 - 9948818
Alignment:
| Q |
228 |
tcaatggtggagatgattgtggagaataatataagggaatcaaaggatttggaggatttacttgcttgctatctttctcttaattcaagtgaatatcatg |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||| | |||||||| ||||||||| | |||||| ||| ||||||| |
|
|
| T |
9948924 |
tcaatggtggagatgattgtggagaataacataagagcatcaaaggatttggaagatcttcttgcttgttatctttctttgaattcagatgagtatcatg |
9948825 |
T |
|
| Q |
328 |
atgttat |
334 |
Q |
| |
|
|| |||| |
|
|
| T |
9948824 |
atcttat |
9948818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 27066055 - 27066167
Alignment:
| Q |
216 |
gatttcaaagaatcaatggtggagatgattgtggagaataatataagggaatcaaaggatttggaggatttacttgcttgctatctttctcttaattcaa |
315 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| || || || ||||||||||||||| ||| | |||||||| || |||||| | |||||| |
|
|
| T |
27066055 |
gatttcagagaatcaatggtggagatgattgttcagaacaacattagaacatcaaaggatttggaagatcttcttgcttgttacctttctttgaattcag |
27066154 |
T |
|
| Q |
316 |
gtgaatatcatga |
328 |
Q |
| |
|
||| |||||||| |
|
|
| T |
27066155 |
atgagtatcatga |
27066167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 27212258 - 27212146
Alignment:
| Q |
216 |
gatttcaaagaatcaatggtggagatgattgtggagaataatataagggaatcaaaggatttggaggatttacttgcttgctatctttctcttaattcaa |
315 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| || || || ||||||||||||||| ||| | |||||||| || |||||| | |||||| |
|
|
| T |
27212258 |
gatttcagagaatcaatggtggagatgattgttcagaacaacattagaacatcaaaggatttggaagatcttcttgcttgttacctttctttgaattcag |
27212159 |
T |
|
| Q |
316 |
gtgaatatcatga |
328 |
Q |
| |
|
||| |||||||| |
|
|
| T |
27212158 |
atgagtatcatga |
27212146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University