View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17144_high_11 (Length: 297)

Name: NF17144_high_11
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17144_high_11
NF17144_high_11
[»] chr1 (1 HSPs)
chr1 (16-297)||(49950215-49950495)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 49950215 - 49950495
Alignment:
Q  16 atatacctatcaaataatccaaaaagctccatttaacggaagcataagccttttcaaagcagattgattagtcgagactaagacaaatgataacatttgc 115  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  49950215 atatacctatcaaataatccaaaatt-tccatttaacggaagcataagccttttcaaagtagattggttagtcgagactaagacaaatgataacatttgc 49950313  T
Q  116 gaactactcagctagaattttggcaagcaatttgtgcaataacctaccagtcagatatgtctaaaatcctaaccgaaaaggtgatgcgattttaggaatt 215  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49950314 gaaccactcagctagaattctggcaagcaatttgtgcaataacctaccagttagatatgtctaaaatcctaaccgaaaaggtgatgcgattttaggaatt 49950413  T
Q  216 agggtgaggaagtaggaagggaaacttggaggaagtgtagcattatagtgaaaccgaacgaacaaaatcccgaagtcctcac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49950414 agggtgaggaagtaggaagggaaacttggaggaagtgtagcattatagtgaaaccgaacgaacaaaatcccgaagtcctcac 49950495  T

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