View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17144_high_2 (Length: 447)
Name: NF17144_high_2
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 432
Target Start/End: Original strand, 51528141 - 51528571
Alignment:
| Q |
14 |
aatatcttcattgcacattcactatatcatgttt----------tgatgaggaagaccttgttgtgttattgtatgtggatactcgtagattctgttttg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51528141 |
aatatcttcattgcacattcactatatcaagtttaagtaattattgatgaggaagaccttgttgtgttattgtatgtggatactcgtagattctgttttg |
51528240 |
T |
|
| Q |
104 |
tccccaactactaagctaagtgtattggttccttttgttttagagatgcatttgatgttaaaatttctaaaaatacact--gtccagattttaaagaaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51528241 |
tccccaactactaagctaagtgtattggctccttttgttttagagatgcatttgatgttaaaatttctaaaaatacactctgtccagattttaaagaaat |
51528340 |
T |
|
| Q |
202 |
gaataaaaacaagagaaatgttggattcagcaacaacaatcttccttgttttccgccaaggtaagagagtaaaacggcaagcaattaaagaatttacacg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51528341 |
gaataaaaacaagagaaatgttggattcagcaacaacaatcttccttgttttccgccaaggtaagagagtaaaacggcaagcaattaaagaatttacacg |
51528440 |
T |
|
| Q |
302 |
atcgggatgttttcgctatgaaaaatttgcactatatatataacactcctgtaaaaacaatcatcaaaacaaacaagattatggatgagtcaaacactag |
401 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51528441 |
atcgggatgttttcgctatgaaaaattcgcactatatatataacactcctgtaaaaacaatcatcaaaaaaaacaagattatggatgagtcaaacactag |
51528540 |
T |
|
| Q |
402 |
tgtcattctcacaagatgatatgttttcttc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
51528541 |
tgtcattctcacaagatgatatgttttcttc |
51528571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 52232933 - 52232874
Alignment:
| Q |
47 |
ttgatgaggaagaccttgttgtgttattgtatgtggatactcgtagattctgttttgtcc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
52232933 |
ttgatgaggaagaccttgttgtgttattgtatgcggttactcgtaggttctgttttgtcc |
52232874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 52232434 - 52232398
Alignment:
| Q |
129 |
tggttccttttgttttagagatgcatttgatgttaaa |
165 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
52232434 |
tggttccttttgttttagacatgtatttgatgttaaa |
52232398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 358
Target Start/End: Original strand, 15310845 - 15310964
Alignment:
| Q |
233 |
aacaacaatcttccttgttttccgccaaggtaagagagtaaaacggcaagcaattaaagaatttacacgatcgggatgttttcgctatgaaaaatttgca |
332 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| ||| || |||||||||| |||||||| ||| ||| ||||||| || ||||||| || |
|
|
| T |
15310845 |
aacaacaatcttccttattttccgtgaaggtaagagagtcaaatgg--tgcaattaaagcatttacacactcgagatattttcgcgattaaaaattggc- |
15310941 |
T |
|
| Q |
333 |
ctatatatataacactcctgtaaaaa |
358 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
15310942 |
---gatatataacactccggtaaaaa |
15310964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University