View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17144_high_4 (Length: 372)
Name: NF17144_high_4
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_high_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 372
Target Start/End: Original strand, 2732359 - 2732711
Alignment:
| Q |
21 |
actagtatatcaatttgtttacgctagcacctagattattgtaatgtttaaaagtcaaaatgagtgtttatcctagtaatttttacttatatttgaattt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2732359 |
actagtatatcaatttgtttacgctagcacctagattattgtaatgtttaaaagtcaaaatgagtgtttatactagtaatttttacttatatttgaattt |
2732458 |
T |
|
| Q |
121 |
aaataaactattaaagaaaaacgagcaataagatccgagctactacccctnnnnnnngatttgagctgctaattaaaattaaaatgtacatcaaagattc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2732459 |
aaataaactattaaagaaaaacgagcaataagatccgagctactacccctagaaaaagatttgagctgctaattaaaattaaaatgtacatcaaagattc |
2732558 |
T |
|
| Q |
221 |
tgc-ttgtctaagatcacaaaaagtatgcaaacgattttggctcttctgtatggtatttcttgtgaaaaattgttgttcccacttcagtttttgtttgaa |
319 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2732559 |
tgctttgtctaatgtcacaaaaagtatgcaaacgattttggctcttctgtatggtatttcttgtgaaaaattgttgttcccactttagtttttgtttgaa |
2732658 |
T |
|
| Q |
320 |
aacacatgaaaattacacatttaacttcaacagtagttaactaccgtttgact |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2732659 |
aacacatgaaaattacacatttaacttcaacagtagttaactaccgtttgact |
2732711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 28738880 - 28738812
Alignment:
| Q |
278 |
tcttgtga-aaaattgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaact |
345 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
28738880 |
tcttgtgagaaaatcgttgttcccacttcagtttttacttgaaaacacatgaaaattacacattaaact |
28738812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 28738685 - 28738760
Alignment:
| Q |
289 |
attgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactacc |
364 |
Q |
| |
|
||||||||||||| ||||||||| | || ||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
28738685 |
attgttgttcccatttcagttttcgcttaaaaacacatgaaaattacacatttaacctcaacgatagctaactacc |
28738760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 38909110 - 38909036
Alignment:
| Q |
289 |
attgttgttcccacttcagtttttgtttgaaaacacat-gaaaattacacatttaacttcaacagtagttaacta |
362 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
38909110 |
attgttgttcccacttcagattttgtttgaaaacacataaaaaattaaacatttaaccccaacagtagctaacta |
38909036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 33629592 - 33629522
Alignment:
| Q |
294 |
tgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactacc |
364 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||| |||||||||||||||| |||| |||| |||||||| |
|
|
| T |
33629592 |
tgttcccatttcagattttgcttgaaaacacatggaaattacacatttaaccccaacggtagctaactacc |
33629522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 36944440 - 36944510
Alignment:
| Q |
285 |
aaaaattgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtag |
355 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
36944440 |
aaaaattgttgttctcgtttcagtttttgcttgaaaacatgtgaaaattacatatttaacatcaacagtag |
36944510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 11758712 - 11758639
Alignment:
| Q |
286 |
aaaattgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaa |
359 |
Q |
| |
|
|||||||||||| ||||| | |||| | |||||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
11758712 |
aaaattgttgtttacactttaaattttatgtgaaaacatataaaatttacacatttaacttcaacagtagttaa |
11758639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 4568012 - 4568093
Alignment:
| Q |
289 |
attgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactaccgtttga |
370 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| || ||||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
4568012 |
attgttgttcccacttcaatttttgcatgaaaacacgtggaaattacgtgtttaactccaacggtagttaactaccgtttga |
4568093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 33102213 - 33102282
Alignment:
| Q |
286 |
aaaattgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtag |
355 |
Q |
| |
|
|||||||||||| | ||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
33102213 |
aaaattgttgtttctactacaaattttgtttgaaaacacataaaaattacacatttaacttcaacggtag |
33102282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 33102398 - 33102345
Alignment:
| Q |
290 |
ttgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaa |
343 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||| || |||||| |||||| |
|
|
| T |
33102398 |
ttgttgtttccacttcagattttgcttgaaaacacatcaagattacatatttaa |
33102345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 10228699 - 10228655
Alignment:
| Q |
290 |
ttgttgttcccacttcagtttttgtttgaaaacacatgaaaatta |
334 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
10228699 |
ttgttgtttccagttcagtttttgcttgaaaacacatggaaatta |
10228655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 372
Target Start/End: Complemental strand, 46221797 - 46221710
Alignment:
| Q |
285 |
aaaaattgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactaccgtttgact |
372 |
Q |
| |
|
||||||||||||| |||||| | |||||| | |||||||||| ||||||||||||| || |||||||| |||||||| ||||||| |
|
|
| T |
46221797 |
aaaaattgttgtttccactttaatttttgctagaaaacacatagaaattacacatttgaccataacagtagctaactaccatttgact |
46221710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 36946700 - 36946758
Alignment:
| Q |
285 |
aaaaattgttgttcccacttcagtttttgtttgaaaacacatgaaaattacacatttaa |
343 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||||| |||||| |||||||| |
|
|
| T |
36946700 |
aaaaattgctgttcccacttcagtttttgctagaaaacacatataaattatacatttaa |
36946758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 56061631 - 56061673
Alignment:
| Q |
300 |
cacttcagtttttgtttgaaaacacatgaaaattacacattta |
342 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
56061631 |
cactttagtttttgcttgaaaacacatgaaaattacacattta |
56061673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University