View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17144_high_9 (Length: 312)
Name: NF17144_high_9
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 13289004 - 13288865
Alignment:
| Q |
35 |
acaaaatcaactattctactaaaaatggaccctagtttcaaagttcaaaagttacaataattacttcttttatcaattatgtaaacttacattagtgaat |
134 |
Q |
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| T |
13289004 |
acaaaatcaactgttctactaaaaatggaccctagtttcaaagttcaaaagttacactaattacttcttttatcaattatgtaaacttacattagtgaat |
13288905 |
T |
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| Q |
135 |
ataaagggtatagacatgcttgagcttgagtatgtcaatg |
174 |
Q |
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| T |
13288904 |
ataaagggtatagatatgcttgagcttgagtatgtcaatg |
13288865 |
T |
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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 13288811 - 13288735
Alignment:
| Q |
228 |
cacatgtgaaggagtatctaa----ctagtgttttggtaatgtttttgtaaaccataatgtaaaggtagtatatatt |
300 |
Q |
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| T |
13288811 |
cacatgtgaaggagtatctaattaactagtgttttggtaatgtttttgtaaaccataatgtaaaggtagtatatatt |
13288735 |
T |
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