View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17144_low_14 (Length: 265)
Name: NF17144_low_14
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 5697414 - 5697178
Alignment:
| Q |
13 |
cagagagtacaaacaaattgatgtaaaatttacacatatatcttttataatataatatcttattataaagtgaaacaattaatattgtgaaaaaggaatc |
112 |
Q |
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| T |
5697414 |
cagagagtacaaacaaattgatgtaaaatttacacatatatcttttataatataatatcttattataaagtgaaacaattaatattgtgaaaaaggaatc |
5697315 |
T |
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| Q |
113 |
acctttagaatattagggtaaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
212 |
Q |
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| T |
5697314 |
acctttagaatattagggtcaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
5697215 |
T |
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| Q |
213 |
gttgtgccattggattaggagaagaatgaatatattg |
249 |
Q |
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| T |
5697214 |
gttgtgccattggattaggagaagaatgaatatattg |
5697178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 5685144 - 5685008
Alignment:
| Q |
113 |
acctttagaatattagggtaaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
212 |
Q |
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||||||||||||||||||| ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5685144 |
acctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
5685045 |
T |
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| Q |
213 |
gttgtgccattggattaggagaagaatgaatatattg |
249 |
Q |
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| T |
5685044 |
gttgtgccattggattaggagaagaatgaatatattg |
5685008 |
T |
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