View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17144_low_15 (Length: 249)

Name: NF17144_low_15
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17144_low_15
NF17144_low_15
[»] chr7 (27 HSPs)
chr7 (16-170)||(4481286-4481440)
chr7 (16-170)||(38434448-38434603)
chr7 (16-170)||(42996658-42996813)
chr7 (16-170)||(42244755-42244909)
chr7 (88-170)||(9226190-9226272)
chr7 (20-85)||(17478102-17478167)
chr7 (20-85)||(17575047-17575112)
chr7 (20-85)||(17482545-17482610)
chr7 (20-85)||(17570604-17570669)
chr7 (16-85)||(42827331-42827400)
chr7 (16-85)||(9149572-9149641)
chr7 (22-85)||(33031012-33031075)
chr7 (23-85)||(11500076-11500138)
chr7 (20-85)||(8925888-8925953)
chr7 (20-85)||(17469946-17470011)
chr7 (20-85)||(17583203-17583268)
chr7 (16-85)||(33638660-33638729)
chr7 (20-85)||(23766423-23766488)
chr7 (20-85)||(27735034-27735098)
chr7 (16-85)||(42918033-42918102)
chr7 (16-81)||(47174663-47174728)
chr7 (44-85)||(5962934-5962975)
chr7 (16-85)||(23299707-23299776)
chr7 (46-85)||(42687792-42687831)
chr7 (20-85)||(14309067-14309132)
chr7 (27-85)||(41262324-41262382)
chr7 (20-85)||(19521339-19521404)
[»] chr2 (25 HSPs)
chr2 (16-170)||(17025833-17025988)
chr2 (16-170)||(17092018-17092173)
chr2 (16-133)||(17037510-17037627)
chr2 (20-85)||(33907473-33907538)
chr2 (88-170)||(14753423-14753505)
chr2 (20-85)||(33663776-33663841)
chr2 (16-85)||(35286322-35286391)
chr2 (16-85)||(4811788-4811857)
chr2 (20-85)||(26827745-26827810)
chr2 (84-170)||(16884033-16884119)
chr2 (84-170)||(17041723-17041809)
chr2 (20-85)||(11706858-11706923)
chr2 (20-85)||(18092704-18092769)
chr2 (20-85)||(26821865-26821930)
chr2 (16-85)||(36633068-36633137)
chr2 (20-85)||(45205000-45205065)
chr2 (20-85)||(21097944-21098009)
chr2 (20-85)||(42885621-42885686)
chr2 (16-81)||(45398983-45399048)
chr2 (16-80)||(28379990-28380054)
chr2 (16-85)||(1514971-1515041)
chr2 (20-85)||(16724331-16724396)
chr2 (44-85)||(30570531-30570572)
chr2 (44-85)||(30572411-30572452)
chr2 (110-170)||(10821174-10821234)
[»] scaffold0088 (1 HSPs)
scaffold0088 (16-170)||(52862-53017)
[»] chr8 (31 HSPs)
chr8 (16-170)||(23626226-23626381)
chr8 (16-170)||(39444971-39445126)
chr8 (16-170)||(12250081-12250236)
chr8 (16-170)||(29433989-29434143)
chr8 (16-170)||(39204581-39204735)
chr8 (20-85)||(6477461-6477526)
chr8 (20-85)||(38993637-38993702)
chr8 (16-85)||(41156589-41156658)
chr8 (16-85)||(44382769-44382838)
chr8 (20-85)||(44599656-44599721)
chr8 (20-85)||(22333089-22333154)
chr8 (16-85)||(22946782-22946851)
chr8 (20-85)||(42810905-42810970)
chr8 (20-85)||(23522625-23522690)
chr8 (20-85)||(33424227-33424292)
chr8 (20-79)||(12760429-12760488)
chr8 (88-170)||(41907800-41907882)
chr8 (19-85)||(45293543-45293609)
chr8 (20-85)||(14078798-14078863)
chr8 (20-85)||(38962123-38962188)
chr8 (20-85)||(38992467-38992532)
chr8 (16-85)||(41977409-41977478)
chr8 (20-85)||(27273187-27273252)
chr8 (44-85)||(16668794-16668835)
chr8 (20-85)||(30826409-30826474)
chr8 (44-85)||(41628869-41628910)
chr8 (16-85)||(19248058-19248127)
chr8 (16-85)||(19321242-19321311)
chr8 (44-85)||(19395532-19395573)
chr8 (44-85)||(36597941-36597982)
chr8 (29-85)||(3751075-3751131)
[»] chr4 (32 HSPs)
chr4 (16-170)||(26870198-26870353)
chr4 (20-170)||(3839275-3839425)
chr4 (20-85)||(7643787-7643852)
chr4 (20-85)||(28973291-28973356)
chr4 (16-85)||(8531041-8531110)
chr4 (20-85)||(38008073-38008138)
chr4 (16-79)||(41984235-41984298)
chr4 (23-85)||(53342641-53342703)
chr4 (20-85)||(2776506-2776571)
chr4 (20-85)||(5272270-5272335)
chr4 (16-85)||(17740265-17740334)
chr4 (20-85)||(19831392-19831457)
chr4 (20-85)||(22116046-22116111)
chr4 (20-85)||(28135060-28135125)
chr4 (20-85)||(36857316-36857381)
chr4 (20-85)||(39742741-39742806)
chr4 (20-85)||(54331638-54331703)
chr4 (20-85)||(21353313-21353378)
chr4 (20-85)||(40622377-40622442)
chr4 (20-85)||(13628281-13628347)
chr4 (20-85)||(14829506-14829571)
chr4 (44-85)||(33502992-33503033)
chr4 (20-85)||(34056558-34056623)
chr4 (20-85)||(35495538-35495603)
chr4 (16-85)||(47557420-47557489)
chr4 (20-85)||(55998707-55998772)
chr4 (20-85)||(37701592-37701659)
chr4 (20-79)||(17699406-17699465)
chr4 (46-85)||(23479156-23479195)
chr4 (93-146)||(6229629-6229682)
chr4 (81-130)||(29706472-29706521)
chr4 (110-150)||(1944738-1944778)
[»] chr1 (25 HSPs)
chr1 (16-170)||(28631526-28631681)
chr1 (16-170)||(12714691-12714845)
chr1 (16-170)||(13662288-13662442)
chr1 (16-150)||(28565618-28565752)
chr1 (16-81)||(17671670-17671735)
chr1 (16-85)||(45004946-45005015)
chr1 (16-85)||(47135609-47135678)
chr1 (16-85)||(50561255-50561324)
chr1 (20-85)||(48340547-48340612)
chr1 (16-85)||(52310048-52310117)
chr1 (23-85)||(34692336-34692398)
chr1 (16-85)||(16031571-16031640)
chr1 (20-85)||(18814437-18814502)
chr1 (20-85)||(34687805-34687870)
chr1 (16-85)||(51965700-51965769)
chr1 (16-71)||(36681457-36681512)
chr1 (20-85)||(31619907-31619972)
chr1 (20-85)||(38845215-38845280)
chr1 (20-85)||(41830017-41830082)
chr1 (20-85)||(44406578-44406643)
chr1 (16-62)||(12245831-12245877)
chr1 (20-85)||(41962896-41962961)
chr1 (50-85)||(52521585-52521620)
chr1 (16-60)||(24294743-24294787)
chr1 (16-59)||(39760143-39760186)
[»] chr5 (28 HSPs)
chr5 (16-170)||(9702424-9702579)
chr5 (16-170)||(3210093-3210247)
chr5 (88-170)||(290720-290802)
chr5 (20-85)||(10512342-10512407)
chr5 (20-85)||(3397117-3397182)
chr5 (20-85)||(20350098-20350163)
chr5 (16-85)||(20995922-20995991)
chr5 (20-85)||(27066049-27066114)
chr5 (20-85)||(35539897-35539962)
chr5 (16-85)||(41781000-41781069)
chr5 (21-85)||(3028931-3028995)
chr5 (16-83)||(21030280-21030347)
chr5 (20-85)||(34374357-34374423)
chr5 (20-85)||(1851938-1852003)
chr5 (20-85)||(3150582-3150647)
chr5 (20-85)||(20758122-20758187)
chr5 (23-85)||(33611118-33611180)
chr5 (20-85)||(2195341-2195406)
chr5 (20-85)||(4882448-4882513)
chr5 (20-85)||(7285853-7285918)
chr5 (20-85)||(26321053-26321118)
chr5 (16-85)||(33706757-33706826)
chr5 (16-85)||(33929966-33930035)
chr5 (22-85)||(17996743-17996806)
chr5 (20-85)||(19448179-19448244)
chr5 (20-85)||(30689485-30689550)
chr5 (20-85)||(38934638-38934703)
chr5 (16-60)||(31295677-31295721)
[»] scaffold0006 (2 HSPs)
scaffold0006 (16-170)||(152050-152204)
scaffold0006 (110-150)||(64622-64662)
[»] chr3 (24 HSPs)
chr3 (16-170)||(16496095-16496249)
chr3 (16-170)||(11383317-11383471)
chr3 (16-170)||(54792860-54793014)
chr3 (88-170)||(35437045-35437127)
chr3 (20-85)||(50771227-50771292)
chr3 (16-85)||(52462913-52462982)
chr3 (88-170)||(36164998-36165080)
chr3 (89-170)||(12157877-12157958)
chr3 (20-85)||(50741561-50741626)
chr3 (16-79)||(40827021-40827084)
chr3 (16-85)||(11597943-11598012)
chr3 (20-85)||(16341864-16341929)
chr3 (20-85)||(32755725-32755790)
chr3 (20-85)||(51248558-51248623)
chr3 (20-85)||(54512992-54513057)
chr3 (16-76)||(48521011-48521071)
chr3 (20-85)||(21699549-21699614)
chr3 (20-85)||(35087818-35087883)
chr3 (20-85)||(48976893-48976958)
chr3 (20-85)||(55294760-55294824)
chr3 (20-85)||(6104107-6104172)
chr3 (20-85)||(31368996-31369061)
chr3 (44-85)||(52853424-52853465)
chr3 (20-85)||(49113275-49113339)
[»] scaffold0051 (1 HSPs)
scaffold0051 (88-170)||(61503-61585)
[»] scaffold0242 (1 HSPs)
scaffold0242 (20-85)||(3399-3464)
[»] chr6 (20 HSPs)
chr6 (88-170)||(1932129-1932211)
chr6 (22-85)||(22373829-22373892)
chr6 (20-85)||(17939716-17939781)
chr6 (16-85)||(14831675-14831744)
chr6 (20-85)||(18598974-18599039)
chr6 (16-80)||(34321283-34321347)
chr6 (20-85)||(1073251-1073316)
chr6 (20-85)||(4424679-4424744)
chr6 (20-85)||(18311985-18312050)
chr6 (20-85)||(34856146-34856211)
chr6 (20-85)||(2521359-2521424)
chr6 (20-85)||(21799736-21799801)
chr6 (16-85)||(25540263-25540332)
chr6 (20-85)||(30044402-30044467)
chr6 (44-85)||(7222528-7222569)
chr6 (44-85)||(14887926-14887967)
chr6 (20-68)||(35041287-35041335)
chr6 (92-163)||(4425702-4425773)
chr6 (19-85)||(33321442-33321506)
chr6 (20-54)||(15275852-15275886)
[»] scaffold0079 (1 HSPs)
scaffold0079 (16-85)||(10590-10659)
[»] scaffold0045 (1 HSPs)
scaffold0045 (16-80)||(12916-12980)
[»] scaffold0016 (1 HSPs)
scaffold0016 (16-78)||(100805-100867)
[»] scaffold0171 (1 HSPs)
scaffold0171 (16-85)||(29978-30047)
[»] scaffold0236 (1 HSPs)
scaffold0236 (20-85)||(26695-26760)
[»] scaffold0110 (1 HSPs)
scaffold0110 (20-85)||(49215-49280)
[»] scaffold0047 (1 HSPs)
scaffold0047 (20-85)||(26340-26405)
[»] scaffold0005 (1 HSPs)
scaffold0005 (20-85)||(10138-10203)
[»] scaffold0122 (1 HSPs)
scaffold0122 (44-85)||(652-693)
[»] scaffold0010 (1 HSPs)
scaffold0010 (44-85)||(120105-120146)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 4481440 - 4481286
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4481440 atagaacatgctcttttccaacaacaaatctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 4481341  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4481340 tttcacatttatgaacggcagtaatttcttagaaagatgcagttatttcccttaa 4481286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 38434603 - 38434448
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38434603 atagaacatgctcttttcccacatcaaatctttataatgctttggtaaatgttatagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 38434504  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||  |||||||| ||||| | |||| ||||||||||||    
T  38434503 tttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaa 38434448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 42996658 - 42996813
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  42996658 atagaacatgctcttttcctacatcaaatctttataatgctttggtaaatgttttagaaatgtaaatatagttgagatttgtgcaatatgcttgcttgat 42996757  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||| ||||||||||||| ||  | |||||| ||||| | |||| ||||||||||||    
T  42996758 tttgacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaa 42996813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 42244909 - 42244755
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  42244909 atagaacatgctcttttcctacaataaatttttataatgttttggtaaatgttttagaaatgtacatatagctaagatttgtataatatgcttgcttgat 42244810  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||| | ||| ||||||||||||||| | || ||||| ||||||    
T  42244809 tttcacatttatgaatgacagcaatttcttagaaagatgtagctattttccttaa 42244755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 9226272 - 9226190
Alignment:
Q  88 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||    
T  9226272 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacgacaacaatttcttagaaagatgcagttatttcccttaa 9226190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17478102 - 17478167
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17478102 aacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtacatata 17478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 17575112 - 17575047
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17575112 aacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtacatata 17575047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17482545 - 17482610
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  17482545 aacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtatatata 17482610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 17570669 - 17570604
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  17570669 aacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtatatata 17570604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 42827400 - 42827331
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||    
T  42827400 atagaacatgctcttttcctacaacaaatttttataatgctttggtaaatgttttagaaatgtatatata 42827331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 9149572 - 9149641
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  9149572 atagaacatgttcttttcctataacaaatctttataatgctttggtaaatgttttagaaatgtacttata 9149641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 33031012 - 33031075
Alignment:
Q  22 catgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  33031012 catgctcttttcctacaacaaatctttataatgttttgataaatgttttagaaatgtacatata 33031075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 11500076 - 11500138
Alignment:
Q  23 atgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  11500076 atgctcttttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 11500138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 8925953 - 8925888
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||    
T  8925953 aacatgctattttcctacaataaatctttacaatgctttggtaaatgttttagaaatgtacatata 8925888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17469946 - 17470011
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||||||||    
T  17469946 aacatgctcttttcctacagtaaatctttataatgctttggtaattgttttagaaatgtacatata 17470011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 17583268 - 17583203
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||||||||    
T  17583268 aacatgctcttttcctacagtaaatctttataatgctttggtaattgttttagaaatgtacatata 17583203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 33638729 - 33638660
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  33638729 atagaacatgttcttttcccacagcaaatctttataatgctttggtaaatgttttagaaatgtacttata 33638660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 23766488 - 23766423
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  23766488 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 23766423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 27735098 - 27735034
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  27735098 aacatgttcttttcctacaacaaatctttata-tgctttggtaaatgttttagaaatgtacttata 27735034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 42918033 - 42918102
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||| ||||||| ||||    
T  42918033 atagaacatgttcttttactacaacaaatctttataatgctttggtaaatcttttagtaatgtacttata 42918102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 47174663 - 47174728
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtaca 81  Q
    ||||||||| ||||||| |||||  || ||||||||||||||||||||||||||||||||||||||    
T  47174663 atagaacattctctttttctacagtaagtctttataatgctttggtaaatgttttagaaatgtaca 47174728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 5962934 - 5962975
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5962934 tctttataatgctttggtaaatgttttagaaatgtacatata 5962975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 23299776 - 23299707
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| ||||||||||||  || | ||||||||| ||||||||||||||||||||||||| ||||    
T  23299776 atagaacatgttcttttcctacaggaaatatttataatgttttggtaaatgttttagaaatgtacttata 23299707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 42687792 - 42687831
Alignment:
Q  46 tttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42687792 tttataatgctttggtaaatgttttagaaatgtacatata 42687831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 14309067 - 14309132
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| |||||||||   || |||||| |||| ||||||||||||||||||||||||||||||    
T  14309067 aacatgctattttcctacggtaaatctttacaatgttttggtaaatgttttagaaatgtacatata 14309132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 41262382 - 41262324
Alignment:
Q  27 tcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||   || ||||||||||| |||||||||| |||||||||||||||||||    
T  41262382 tcttttcctacggtaaatctttataatgttttggtaaatattttagaaatgtacatata 41262324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 19521339 - 19521404
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||| |  || ||||||||||||||||| |||||||||| |||| || |||||    
T  19521339 aacatgctcttttcctatagtaaatctttataatgctttgggaaatgttttataaatatatatata 19521404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 17025833 - 17025988
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17025833 atagaacatgctcttttcccacatcaaatctttataatgctttggtaaatgttctagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 17025932  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||  |||||||| ||||| | |||| ||||||||||||    
T  17025933 tttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaa 17025988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 17092018 - 17092173
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17092018 atagaacatgctcttttcctacatcaaagctttataatgctttggtaaatgttctagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 17092117  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||  |||||||| ||||| | |||| ||||||||||||    
T  17092118 tttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaa 17092173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 17037510 - 17037627
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  17037510 atagaacatgctcttttcccacatcaaatctttataatgctttggtaaatgttctagaaatgtacatatagctgagatttgtgccatatgcttgcttgat 17037609  T
Q  116 tttcacatttatgaacgg 133  Q
    ||||||||||||||||||    
T  17037610 tttcacatttatgaacgg 17037627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 33907473 - 33907538
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33907473 aacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtacatata 33907538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 14753423 - 14753505
Alignment:
Q  88 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||| |||| ||||||||||||    
T  14753423 tgagatttgtgcaatatgcttgcttgattttaacatttatgaacgacaacaatttcttagaaagatgcagctatttcccttaa 14753505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 33663841 - 33663776
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  33663841 aacatgctcttttcctacagcaaatctttataatgctttggtaaatgttttagaaatgtacatata 33663776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 35286391 - 35286322
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||    
T  35286391 atagaacatgctcttttcctccagcaaatctttataatgctttggtaaatgttttagaaatgtacatata 35286322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 4811788 - 4811857
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||    
T  4811788 atagaacatgctcttttcctacaacaaatctttataacgctttggtaaatgttgtagaaatgtatatata 4811857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 26827745 - 26827810
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  26827745 aacatgctcttttcctacagcaaatctttataatgttttggtaaatgttttagaaatgtacatata 26827810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 16884033 - 16884119
Alignment:
Q  84 tagctgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| | | || ||||||||||||    
T  16884033 tagctgatttttgtgcaatatgcttgcttgattttcacatttatgaacggaaacaatttcttagaaaaatgaagctatttcccttaa 16884119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 17041723 - 17041809
Alignment:
Q  84 tagctgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| | | || ||||||||||||    
T  17041723 tagctgatttttgtgcaatatgcttgcttgattttcacatttatgaacggaaacaatttcttagaaaaatgaagctatttcccttaa 17041809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 11706858 - 11706923
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  11706858 aacatgctcttttcatacagcaaatctttataatgttttggtaaatgttttagaaatgtacatata 11706923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 18092769 - 18092704
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  18092769 aacatgttcttttcctacaacaaatctttataatgatttggtaaatgttttagaaatgtacttata 18092704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 26821865 - 26821930
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  26821865 aacatgctattttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 26821930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 36633137 - 36633068
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||  ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  36633137 atagaacatgctctttatctacagcaaatctttataatgctttggtaaatgttttagaaatgtacttata 36633068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 45205065 - 45205000
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  45205065 aacaagctcttttcctacaacaaatctttatgatgctttgataaatgttttagaaatgtacatata 45205000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 21097944 - 21098009
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||| || | |||| |||||||||||||||||||||||||||||||||||    
T  21097944 aacatgctattttcctacaataaatatttacaatgctttggtaaatgttttagaaatgtacatata 21098009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 42885621 - 42885686
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||| |||||    
T  42885621 aacatgctcttttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtaaatata 42885686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 45398983 - 45399048
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtaca 81  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||| |||||    
T  45398983 atagaacatgctcttttactacagcaaatctttataatgctttggtaaatattttagaaacgtaca 45399048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 28380054 - 28379990
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtac 80  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||| ||||    
T  28380054 atagaacatgctcttttactacagcaaatctttataatgctttggtaaatattttagaaacgtac 28379990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 1515041 - 1514971
Alignment:
Q  16 atagaacatgctcttttcc-tacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  1515041 atagaacatgttcttttccctacagcaaatctttataatgttttggtaaatgttttagaaatgtacttata 1514971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 16724396 - 16724331
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || || ||| ||| |||||||||||||||||||||||||||||||    
T  16724396 aacatgctattttcctacagtaaatccttacaatcctttggtaaatgttttagaaatgtacatata 16724331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 30570572 - 30570531
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  30570572 tctttataatgcttcggtaaatgttttagaaatgtacatata 30570531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 30572452 - 30572411
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  30572452 tctttataatgcttcggtaaatgttttagaaatgtacatata 30572411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 10821234 - 10821174
Alignment:
Q  110 cttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||| ||  |||||||||| || | |||| ||||||||||||    
T  10821234 cttgattttcacatttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaa 10821174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 53017 - 52862
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53017 atagaacatgctcttttcctacatcaaatctttataatgctttggtaaatgttttagaaatgtacatatagttgagatttgtgcaatatgcttgcttgat 52918  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  | |||||| ||||| | |||| ||||||||||||    
T  52917 tttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaa 52862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 23626381 - 23626226
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23626381 atagaacatgctcttttcccacatcaaatctttataatgctttggtaaatgttttagaaatgtacatatacctgagatttgtgcaatatgcttgcttgat 23626282  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    |||||||||||||||| |||  |||||||| ||||| | |||| ||||||||||||    
T  23626281 tttcacatttatgaacagcaacaatttcttaagaaaaatgcagatatttcccttaa 23626226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 39444971 - 39445126
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39444971 atagaacatgctcttttcctacatcaaatctttataatgctttggtaaatgttttagaaatgtacatatagttgagatttgtgcaatatgcttgcttgat 39445070  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  | |||||| ||||| | |||| ||||||||||||    
T  39445071 tttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaa 39445126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 12250236 - 12250081
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12250236 atagaacatgctcttttcctacatcaaatctttataatgctttggtaaatgttttagaaatgtacatatagttgagatttgtgcaatatgcttgcttgat 12250137  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    |||||| |||||||||| ||  | |||||| ||||| | |||| ||||||||||||    
T  12250136 tttcacgtttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaa 12250081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 29433989 - 29434143
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  29433989 atagaacatgctattttcttacaacaaatttttataatgctttggtaaatgttttagaaatgtacatatagatgagatttgtgtaatatgcttgcttgat 29434088  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||| ||||||||||  ||  ||||||||||||||| |||| ||||||||||||    
T  29434089 tttcatatttatgaacaacatcaatttcttagaaagatgcagctatttcccttaa 29434143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 39204581 - 39204735
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||| ||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  39204581 atagaacgtgctcttttcctacatcaaatcttcataatgttttggtaaatgttttagaaatgtacgtatagctgatatttgtgcaatatgcttgcttgat 39204680  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||  |||||||||| || | ||| |||||| ||||||    
T  39204681 tttcacatttatgaacggcaacaatttcttaggaaaatgcaattattttccttaa 39204735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 6477526 - 6477461
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  6477526 aacatgctcttttcctacaataaatctttataatgctttggtaaatgttttagaaatgtacatata 6477461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38993637 - 38993702
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  38993637 aacatgctcttttcctacatcaaatctttataatgctttggtaaatgttttagaaatgtacatata 38993702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 41156589 - 41156658
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  41156589 atagaacatgttcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtacttata 41156658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 44382838 - 44382769
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  44382838 atagaacatgttcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtacttata 44382769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 44599656 - 44599721
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  44599656 aacatgctcttttcctacatcaaatctttataatgctttggtaaatgttttagaaatgtacatata 44599721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 22333154 - 22333089
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  22333154 aacatgctcttttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 22333089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 22946851 - 22946782
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| |||||    
T  22946851 atagaacatgctcttttcctccagcaaatctttataatgctttggtaaatgttttagaaatgtatatata 22946782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 42810970 - 42810905
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  42810970 aacatgctcttttcctacattaaatctttataatgctttggtaaatgttttagaaatgtacatata 42810905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 23522690 - 23522625
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||||||||    
T  23522690 aacatgctcttttcctacagtaaatctttataatgctttggtaattgttttagaaatgtacatata 23522625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 33424292 - 33424227
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||    
T  33424292 aacatgctattttcctacaataaatctttacaatgctttggtaaatgttttagaaatgtacatata 33424227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 12760429 - 12760488
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgta 79  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  12760429 aacatgttcttttcctacaacaaatctttacaatgctttggtaaatgttttagaaatgta 12760488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 41907800 - 41907882
Alignment:
Q  88 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||| ||||||||||||||||| |||||||||||   ||  ||||||||||||||| |||| ||||||||||||    
T  41907800 tgagatttgtgcagtatgcttgcttgattttgacatttatgaaaaacaacaatttcttagaaagatgcagctatttcccttaa 41907882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 45293609 - 45293543
Alignment:
Q  19 gaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  45293609 gaacatgttcctttcctataacaaatctttataatgctttggtaaatgttttagaaatgtacttata 45293543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 14078863 - 14078798
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  14078863 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 14078798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38962123 - 38962188
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||| ||  || ||||||||||| ||||||||||||||||||||||||||||||    
T  38962123 aacatgctcttttcctgcagtaaatctttataatgatttggtaaatgttttagaaatgtacatata 38962188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38992467 - 38992532
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||| ||  || ||||||||||| ||||||||||||||||||||||||||||||    
T  38992467 aacatgctcttttcctgcagtaaatctttataatgatttggtaaatgttttagaaatgtacatata 38992532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 41977409 - 41977478
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| | |||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  41977409 atagaacatgttatttttctacagcaaatctttataatgctttggtaaatgttttagaaatgtacttata 41977478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 27273187 - 27273252
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| | ||||||||||  || ||||||||||||||||||||||||||||||||| ||||||||    
T  27273187 aacatgttattttcctacagtaaatctttataatgctttggtaaatgttttagaaatatacatata 27273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 16668835 - 16668794
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  16668835 tctttataatgctttggtaaatgttttagaaatgtatatata 16668794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 30826409 - 30826474
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| ||||||||| ||||| |||||||||||||||||||    
T  30826409 aacatgctattttcctacagtaaatctttacaatgctttgataaatattttagaaatgtacatata 30826474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 41628869 - 41628910
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  41628869 tctttataatgttttggtaaatgttttagaaatgtacatata 41628910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 19248058 - 19248127
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||| ||| || |||||||| |||||||||| ||||  |||||||| ||||    
T  19248058 atagaacatgttcttttcctacagcaaatcgttataatgttttggtaaatattttgaaaatgtacttata 19248127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 19321242 - 19321311
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||| ||| || |||||||| |||||||||| ||||  |||||||| ||||    
T  19321242 atagaacatgttcttttcctacagcaaatcgttataatgttttggtaaatattttgaaaatgtacttata 19321311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 19395573 - 19395532
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  19395573 tctttataatgctttgctaaatgttttataaatgtacatata 19395532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 36597982 - 36597941
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  36597982 tctttataatgctttggtaaatgattaagaaatgtacatata 36597941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 3751075 - 3751131
Alignment:
Q  29 ttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||| || ||| ||||||||||||| ||||||||||||||||||| ||| ||||    
T  3751075 ttttccttcagcaaatctttataatgctctggtaaatgttttagaaatatacttata 3751131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 26870353 - 26870198
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26870353 atagaacatgctcttttcctacatcaaatctttataatgctttggtaaatgttttagaaatgtacatatagttgagatttgtgcaatatgcttgcttgat 26870254  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  | |||||| ||||| | |||| ||||||||||||    
T  26870253 tttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaa 26870198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 3839425 - 3839275
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgattttc 119  Q
    ||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3839425 aacatgctcttttcctatagcaaatttttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgtaatatgcttgcttgattttc 3839326  T
Q  120 acatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||  ||  ||||||||||||||| |||| ||||||||||||    
T  3839325 acatttatgaacaacaacaatttcttagaaagatgcagctatttcccttaa 3839275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 7643852 - 7643787
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  7643852 aacatgctcttttcctacaacaaatctttataatgcttaggtaaatgttttagaaatgtacatata 7643787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 28973291 - 28973356
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28973291 aacatgctcttttcatacaacaaatctttataatgctttggtaaatgttttagaaatgtacatata 28973356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 8531041 - 8531110
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  8531041 atagaacatgttcttttcctacaacaaatctttataatgttttggtaaatgttttagaaatgtacttata 8531110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38008073 - 38008138
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||    
T  38008073 aacatgctcttttcctacagcaaatctttataatgctttggtaaatgttttaaaaatgtacatata 38008138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 41984298 - 41984235
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgta 79  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  41984298 atagaacatgctcttttcgtacagcaaatctttataatgctttggtaaatgttttagaaatgta 41984235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 53342641 - 53342703
Alignment:
Q  23 atgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  53342641 atgctcttttcctacattaaatctttataatgctttggtaaatgttttagaaatgtacatata 53342703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 2776506 - 2776571
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||||||||    
T  2776506 aacatgctcttttcctacagtaaatctttataatgctttggtaattgttttagaaatgtacatata 2776571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 5272335 - 5272270
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||    
T  5272335 aacatgctattttcctacaataaatctttacaatgctttggtaaatgttttagaaatgtacatata 5272270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 17740265 - 17740334
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  17740265 atagaatatgttcttttcctacagcaaatctttataatgctttggtaaatgttttagaaatgtacttata 17740334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 19831457 - 19831392
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || ||||||||||| ||||||||||||||||||||||||||||||    
T  19831457 aacatgctcttttcctacagtaaatctttataatgttttggtaaatgttttagaaatgtacatata 19831392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 22116111 - 22116046
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||||||||    
T  22116111 aacatgctcttttcctacagtaaatctttataatgctttggtaattgttttagaaatgtacatata 22116046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 28135125 - 28135060
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || ||||||||||| ||||||||||||||||||||||||||||||    
T  28135125 aacatgctcttttcctacagtaaatctttataatgttttggtaaatgttttagaaatgtacatata 28135060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 36857316 - 36857381
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  36857316 aacatgctattttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 36857381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 39742806 - 39742741
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||    
T  39742806 aacatgctcttttcctacggtaaatctttataatgctttggtaaatgttttagaaatgtacatata 39742741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 54331703 - 54331638
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  54331703 aacatgctattttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 54331638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 21353313 - 21353378
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||   || |||||||||||||||||||| |||||||||||||||||||||    
T  21353313 aacatgctcttttcctacggtaaatctttataatgctttggtaattgttttagaaatgtacatata 21353378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 40622377 - 40622442
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||    
T  40622377 aacatgttcttttcctacagcaaatctttataatgctttggtaaatgtcttagaaatgtacttata 40622442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 13628281 - 13628347
Alignment:
Q  20 aacatgctcttttc-ctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||  |||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  13628281 aacatgctcttttttctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 13628347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 14829571 - 14829506
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||| ||||||||    
T  14829571 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatatacatata 14829506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 33503033 - 33502992
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33503033 tctttataatgctttggtaaatgttttagaaatgtacatata 33502992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 34056623 - 34056558
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||| ||||||||    
T  34056623 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatatacatata 34056558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 35495603 - 35495538
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||    
T  35495603 aacatgttcttttcctacggtaaatctttataatgcgttggtaaatgttttagaaatgtacatata 35495538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 47557489 - 47557420
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||  |||||||| ||||||| |||| ||||||||||||||||| |||||||||||||| ||||    
T  47557489 atagaacatattcttttcccacaacaaatcttcataatgctttggtaaatattttagaaatgtacttata 47557420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 55998772 - 55998707
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||| |||||||||||  || ||||||||||| |||||||||||||||||||||||| |||||    
T  55998772 aacatgcacttttcctacagtaaatctttataatgttttggtaaatgttttagaaatgtatatata 55998707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 37701659 - 37701592
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaa--atgttttagaaatgtacatata 85  Q
    |||||| ||||||||||||| || ||||||||||||||||||||  ||||||||||||||| ||||||    
T  37701659 aacatgttcttttcctacaataaatctttataatgctttggtaaatatgttttagaaatgtgcatata 37701592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 17699406 - 17699465
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgta 79  Q
    |||||||||||||| |||   || ||||||||||||||||||||||||||||||||||||    
T  17699406 aacatgctcttttcttacggtaaatctttataatgctttggtaaatgttttagaaatgta 17699465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 23479156 - 23479195
Alignment:
Q  46 tttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  23479156 tttacaatgctttggtaaatgttttataaatgtacatata 23479195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 6229629 - 6229682
Alignment:
Q  93 tttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttctta 146  Q
    ||||| |||||||||| |||||||||||||||||| |||| ||| ||| |||||    
T  6229629 tttgtacaatatgcttacttgattttcacatttataaacgacagcaatctctta 6229682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 29706521 - 29706472
Alignment:
Q  81 atatagctgagatttgtgcaatatgcttgcttgattttcacatttatgaa 130  Q
    ||||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  29706521 atatagctaggaattgtgcagtatgcttgcttgcttttcacatttatgaa 29706472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 1944738 - 1944778
Alignment:
Q  110 cttgattttcacatttatgaacggcagtaatttcttagaaa 150  Q
    ||||||||||||||||||||||| ||  |||||||||||||    
T  1944738 cttgattttcacatttatgaacgacaacaatttcttagaaa 1944778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 28631526 - 28631681
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28631526 atagaatatgctcttttcccacatcaaatctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 28631625  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  |||||||| ||||| | |||| ||||||||||||    
T  28631626 tttcacatttatgaacgacaacaatttcttaagaaaaatgcagatatttcccttaa 28631681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 12714691 - 12714845
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12714691 atagaacatgttcttttcctacagcaaatctttataatgctttggtaaatgttttataaatgtacatatagctgagatttgtgcaatatgcttgcttgat 12714790  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  |||||| |||||| | |||| | ||||||||||    
T  12714791 tttcacatttatgaacgacaacaatttcatagaaaaatgcagctttttcccttaa 12714845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 13662442 - 13662288
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13662442 atagaacatgctattttcctacagcaaatctttataatgctttggtaaatgttttaaaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 13662343  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  |||||| || ||| | |||| | ||||||||||    
T  13662342 tttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaa 13662288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 28565752 - 28565618
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28565752 atagaacatgctcttttcctacagcaaatctttataatgatttggtaaatgttttaaaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 28565653  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaa 150  Q
    ||||||||||||||||| ||  |||||| ||||||    
T  28565652 tttcacatttatgaacgacaacaatttcatagaaa 28565618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 17671670 - 17671735
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtaca 81  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  17671670 atagaacatgctcttttcctacagcaaatctttataatgctttggtaaatgttttagaaatgtaca 17671735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 45004946 - 45005015
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||||    
T  45004946 atagaacatgctcttttcctacaacaaatctttataatgctttgataaatgttttagaaatatatatata 45005015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 47135609 - 47135678
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  47135609 atagaacatgttcttttcctacaacaaatctttataatgttttggtaaatgttttagaaatgtacttata 47135678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 50561255 - 50561324
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||    
T  50561255 atagaacatgttcttttcctacaacaaatctttataatgctttggtaaatattttagaaatgtacttata 50561324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 48340547 - 48340612
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  48340547 aacaagctcttttcctacaacaaatctttatgatgctttgataaatgttttagaaatgtacatata 48340612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 52310048 - 52310117
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  52310048 atagaacatgttctttttctacaacaaatctttataatgttttggtaaatgttttagaaatgtacttata 52310117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 34692336 - 34692398
Alignment:
Q  23 atgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  34692336 atgctattttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 34692398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 16031640 - 16031571
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||| ||| ||| ||||||| |||||||||||||||||||||||| |||||    
T  16031640 atagaacatgttcttttcctacagcaaatctctataatgttttggtaaatgttttagaaatgtatatata 16031571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 18814437 - 18814502
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  18814437 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 18814502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 34687805 - 34687870
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  34687805 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 34687870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 51965769 - 51965700
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||| ||||||||  |||||||||||||||||||||||||||| |||||||| ||||    
T  51965769 atagaacatgttcttttgctacaacagatctttataatgctttggtaaatgttttaaaaatgtacttata 51965700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 36681457 - 36681512
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgtttta 71  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  36681457 atagaacatgttcttttcctacaacaaatctttataatgctttgataaatgtttta 36681512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 31619907 - 31619972
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||| ||||||||    
T  31619907 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatatacatata 31619972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 38845280 - 38845215
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||||||||||||| ||||| ||||||| |||||    
T  38845280 aacatgctcttttcctacagtaaatctttataatgctttggtaaatattttaaaaatgtatatata 38845215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 41830082 - 41830017
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| |||||||||   || |||||| |||||||||||||||||||||||||||||||||||    
T  41830082 aacatgctattttcctacggtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 41830017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 44406578 - 44406643
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| ||||||||||||  |  |||||||||||||||||||| |||||||||||||||||||||    
T  44406578 aacatgatcttttcctacagtagatctttataatgctttggtaattgttttagaaatgtacatata 44406643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 12245877 - 12245831
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggta 62  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  12245877 atagaacatgctcttttcctccaacaaatctttataatgctttggta 12245831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 41962961 - 41962896
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| | ||||||||||  || ||||||  ||||||||||||||||||||||||||||||||||    
T  41962961 aacatgttattttcctacagtaaatctttacgatgctttggtaaatgttttagaaatgtacatata 41962896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 52521620 - 52521585
Alignment:
Q  50 taatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||||||||||||    
T  52521620 taatgctttggtaaatgttttagaaatgtacatata 52521585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 24294743 - 24294787
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttgg 60  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||    
T  24294743 atagaacatgctctttttctacagcaaatctttataatgctttgg 24294787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 39760186 - 39760143
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttg 59  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||    
T  39760186 atagaacatgctctttttctacagcaaatctttataatgctttg 39760143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 9702424 - 9702579
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9702424 atagaatatgctcttttcccacatcaaatctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 9702523  T
Q  116 tttcacatttatgaacggcagtaatttctt-agaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  |||||||| ||||| | |||| ||||||| ||||    
T  9702524 tttcacatttatgaacgacaacaatttcttaagaaaaatgcagatatttcctttaa 9702579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 3210247 - 3210093
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    ||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  3210247 atagaacgtgctcttttcctacatcaaatcttcataatgctttggtaaatgtttttgaaatatacatatagctgatatttgtgcaatatgcttgcttgat 3210148  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  |||||||||| || | ||| |||||||||||||    
T  3210147 tttcacatttatgaacgacaacaatttcttaggaaaatgcaattatttcccttaa 3210093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 290720 - 290802
Alignment:
Q  88 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||| ||||||||||||    
T  290720 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcatcaatttcttagaaagatgcagctatttcccttaa 290802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 10512407 - 10512342
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  10512407 aacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttataaatgtacatata 10512342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 3397182 - 3397117
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  3397182 aacatgctattttcctacaataaatctttataatgctttggtaaatgttttagaaatgtacatata 3397117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 20350098 - 20350163
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  20350098 aacatgctcttttcctacaacaaatctttataatgctttggtaaatattttagaaatgtatatata 20350163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 20995991 - 20995922
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  20995991 atagaacatgctctttttctacagcaaatctttataatgctttggtaaatgttttagaaatgtacttata 20995922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 27066049 - 27066114
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  27066049 aacatgttcttttcctacaataaatctttataatgctttggtaaatgttttagaaatgtacatata 27066114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 35539962 - 35539897
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35539962 aacatgttcttttcttacaacaaatctttataatgctttggtaaatgttttagaaatgtacatata 35539897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 41781000 - 41781069
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||    
T  41781000 atagaacatgctcttttcctacagcaaatctttataatgctttggtaaatgttttagaaatatatatata 41781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 3028931 - 3028995
Alignment:
Q  21 acatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  3028931 acatgctcttttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 3028995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 21030280 - 21030347
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacata 83  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||| ||||    
T  21030280 atagaacatgctcttttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtgcata 21030347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 34374423 - 34374357
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatg-ctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  34374423 aacatgctcttttcctacatcaaatctttataatggctttggtaaatgttttagaaatgtacatata 34374357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 1852003 - 1851938
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||||    
T  1852003 aacatgctcttttcctacagtaaatctctataatgctttggtaaatgttttagaaatgtacatata 1851938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 3150647 - 3150582
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||||    
T  3150647 aacatgctcttttcctacagtaaatctttataatgctttgataaatgttttagaaatgtacatata 3150582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 20758122 - 20758187
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||||||||    
T  20758122 aacatgctcttttcctacagtaaatctttataatgctttggtaattgttttagaaatgtacatata 20758187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 33611180 - 33611118
Alignment:
Q  23 atgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  33611180 atgctattttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 33611118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 2195341 - 2195406
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  2195341 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 2195406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 4882448 - 4882513
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||| |||||||||||||  || ||||||||||| ||||||||||||||||||||||||||||||    
T  4882448 aacatactcttttcctacagtaaatctttataatgttttggtaaatgttttagaaatgtacatata 4882513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 7285853 - 7285918
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||||||||||||||||||| |||||||||||||||||||    
T  7285853 aacatgctattttcctacagtaaatctttataatgctttggtaaatattttagaaatgtacatata 7285918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 26321118 - 26321053
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  26321118 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 26321053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 33706826 - 33706757
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||||||  |||||||||||||| ||||    
T  33706826 atagaacatgttcttttcccacaacaaatctttataatgctttggtaaaatttttagaaatgtacttata 33706757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 33929966 - 33930035
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||| |||| ||||||||| || ||| ||||||||||||||||||||||||||||||||| || |||||    
T  33929966 atagaccatgttcttttcctccagcaaatctttataatgctttggtaaatgttttagaaatatatatata 33930035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 17996743 - 17996806
Alignment:
Q  22 catgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||  || ||| | |||||||||||||| |||||||||||||||||||||    
T  17996743 catgctcttttcctacagtaaatctatttaatgctttggtaattgttttagaaatgtacatata 17996806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 19448179 - 19448244
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || | ||||||||  |||| |||||||||||||||||||||||||    
T  19448179 aacatgctcttttcctacagtaaatttttataatattttgataaatgttttagaaatgtacatata 19448244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 30689485 - 30689550
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| | ||||||||||  || |||||| |||||||||||||||||||||||||||| ||||||    
T  30689485 aacatgttattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtgcatata 30689550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38934638 - 38934703
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| |||||||| |  || | |||||||||||||||||| |||||||||||||||||||||    
T  38934638 aacatgctattttcctatagtaagtatttataatgctttggtaattgttttagaaatgtacatata 38934703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 31295721 - 31295677
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttgg 60  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||    
T  31295721 atagaacatgctctttttctacagcagatctttataatgctttgg 31295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 152204 - 152050
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  152204 atagaacatgctattttcctacagcaaatctttataatgctttggtaaatgttttaaaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 152105  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  |||||| || ||| | |||| | ||||||||||    
T  152104 tttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaa 152050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 64662 - 64622
Alignment:
Q  110 cttgattttcacatttatgaacggcagtaatttcttagaaa 150  Q
    ||||||||||||||||||||||| ||  |||||||||||||    
T  64662 cttgattttcacatttatgaacgacaacaatttcttagaaa 64622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 16496095 - 16496249
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16496095 atagaacatgctattttcctacagcaaatctttataatgctttggtaaatgttttaaaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 16496194  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  |||||| || ||| | |||| | ||||||||||    
T  16496195 tttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaa 16496249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 11383317 - 11383471
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  11383317 atagaacatgttcttttcctacaacaaagctttataatgctttggtaaatattttagaatggtacatatagctgaaatttgtgcaatatgcttgcttgat 11383416  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||| | ||  ||||||||||| ||  |||||||||||||||||    
T  11383417 tttcacatttatgaaggacaacaatttcttagagaggtgcagttatttcccttaa 11383471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 54793014 - 54792860
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatatagctgagatttgtgcaatatgcttgcttgat 115  Q
    |||||||||| |||||||||||   || |||||||||||||||| |||||| ||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  54793014 atagaacatgttcttttcctacggtaaatctttataatgctttgataaatgctttcgaaatgtacatatagctgagatttacgcaatatgcttgcttgat 54792915  T
Q  116 tttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| ||  |||||| || ||| | |||| | ||||||||||    
T  54792914 tttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaa 54792860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 35437045 - 35437127
Alignment:
Q  88 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||| ||||||||||||    
T  35437045 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacgacaacaatttcttagaaagatgcagctatttcccttaa 35437127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 50771292 - 50771227
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50771292 aacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtacatata 50771227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 52462982 - 52462913
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  52462982 atagaacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtacttata 52462913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 36165080 - 36164998
Alignment:
Q  88 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||| ||||||||| |||| ||||||||||||    
T  36165080 tgagatttgtgcaatatgcttgcttaattttcacatttatgaacgacaacaattttttagaaagatgcagctatttcccttaa 36164998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 12157958 - 12157877
Alignment:
Q  89 gagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| ||  ||||||||||||||| |||||||||||| ||||    
T  12157958 gagatttgtgcaatatgtttgcttgattttcacatttaggaacgacaacaatttcttagaaagatgcagttatttcctttaa 12157877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 50741561 - 50741626
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||    
T  50741561 aacatgctcttttcctacaacaaatctttataatgttttggtaaatgttttagaaatgtatatata 50741626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 40827084 - 40827021
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgta 79  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  40827084 atagaacatgttcttttcctacaacaaatgtttataatgctttggtaaatgttttagaaatgta 40827021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 11598012 - 11597943
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  11598012 atagaacatgttcttttcctacagcaaatctttataatgctttggtaaatgttttagtaatgtacttata 11597943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 16341864 - 16341929
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  16341864 aacatgctattttcctacagcaaatctttataatgcttttgtaaatgttttagaaatgtacatata 16341929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 32755725 - 32755790
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  32755725 aacatgctattttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 32755790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 51248558 - 51248623
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||    
T  51248558 aacatgctcttttcctacagtgaatctttataatgctttggtaaatgttttagaaatgtacatata 51248623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 54512992 - 54513057
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||    
T  54512992 aacatgctcttttcctacatcaaatctttataatactttggtaaatgttttagaaatgtacgtata 54513057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 48521071 - 48521011
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaat 76  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48521071 atagaagatgttcttttcctacaacaaatctttataatgctttggtaaatgttttagaaat 48521011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 21699614 - 21699549
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||| |  || ||||||||||| ||||||||||||||||||||||||||||||    
T  21699614 aacatgctcttttcctatagtaaatctttataatgttttggtaaatgttttagaaatgtacatata 21699549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 35087883 - 35087818
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| | ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  35087883 aacatgttattttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 35087818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 48976893 - 48976958
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || | |||||||||||||||||||||||||| |||||||||||||    
T  48976893 aacatgctcttttcctacagtaaatttttataatgctttggtaaatgttttataaatgtacatata 48976958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 55294824 - 55294760
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  55294824 aacatgttcttttcctacaacaaatctttata-tgctttggtaaatgttttagaaatgtacttata 55294760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 6104172 - 6104107
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| |||||||| |  || |||||| |||||||||||||||||||||||||||||||||||    
T  6104172 aacatgctattttcctatagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 6104107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 31369061 - 31368996
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| | ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  31369061 aacatgttattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 31368996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 52853465 - 52853424
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52853465 tctttataatgctttggtaaatgttttagaaatgtacatata 52853424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 49113275 - 49113339
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || |||||||||||| ||||||||| |||||| ||||||||||||    
T  49113275 aacatgctcttttcctacagtaaatctttataatgc-ttggtaaatattttaggaatgtacatata 49113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 61503 - 61585
Alignment:
Q  88 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||  ||||||||||||||||    
T  61503 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacgacaacaatttcttagaaagatacagttatttcccttaa 61585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 3464 - 3399
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3464 aacatgctcttttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtacatata 3399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 1932129 - 1932211
Alignment:
Q  88 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttatttcccttaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| | |||||||| ||||||    
T  1932129 tgagatttgtgcaatatgcttgcttgattttcacatttatgaacgacaacaatttcttagaaagatgtagttattttccttaa 1932211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 22373892 - 22373829
Alignment:
Q  22 catgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  22373892 catgctcttttcctacaacaaatttttataatgctttggtaaatgttttagaaatgtacatata 22373829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17939716 - 17939781
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  17939716 aacatgctattttcctacaacaaatctttataatgctttggtaaatgttttagaaatgtatatata 17939781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 14831675 - 14831744
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  14831675 atagaacatgttattttcctacaacaaatctttataattctttggtaaatgttttagaaatgtacttata 14831744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 18599039 - 18598974
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  18599039 aacatgctattttcctacagtaaatctttataatgctttggtaaatgttttagaaatgtacatata 18598974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 34321283 - 34321347
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtac 80  Q
    |||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  34321283 atagaacatgttcttttcttacagcaaatctttataatgctttggtaaatgttttagaaatgtac 34321347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 1073316 - 1073251
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  1073316 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 1073251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 4424679 - 4424744
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||| ||||||    
T  4424679 aacatgctcttttcctacaataaatctttataacgctttgataaatgttttagaaatgtgcatata 4424744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 18311985 - 18312050
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||  || || ||||||||||||||||| |||||||||||||||||||||    
T  18311985 aacatgctcttttcctacagtaaatcattataatgctttggtaattgttttagaaatgtacatata 18312050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 34856146 - 34856211
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  34856146 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 34856211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 2521359 - 2521424
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||||| ||||||    
T  2521359 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatgtgcatata 2521424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 21799736 - 21799801
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| |||||||||   || |||||| |||||||||||||||||||||||||||||||||||    
T  21799736 aacatgctattttcctacggtaaatctttacaatgctttggtaaatgttttagaaatgtacatata 21799801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 25540263 - 25540332
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| ||||||||||| |||| ||||||||||| || ||||| |||||||||||||||| ||||    
T  25540263 atagaacatgttcttttcctacgacaaatctttataatgattaggtaactgttttagaaatgtacttata 25540332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 30044402 - 30044467
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| | ||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  30044402 aacatgtttttttcatacagcaaatctttataatgctttggtaaatgttttagaaatgttcatata 30044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 7222528 - 7222569
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  7222528 tctttataatgctttggtaaatgtttaagaaatgtacatata 7222569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 14887967 - 14887926
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  14887967 tctttacaatgctttggtaaatgttttagaaatgtacatata 14887926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 35041287 - 35041335
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgtt 68  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||    
T  35041287 aacatgctcttttcctacaataaatctttataatgctttggtaattgtt 35041335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 4425702 - 4425773
Alignment:
Q  92 atttgtgcaatatgcttgcttgattttcacatttatgaacggcagtaatttcttagaaagacgcagttattt 163  Q
    |||||||  |||||||||||||||||||||||||||||||  ||  ||||||||| ||||| |||| |||||    
T  4425702 atttgtgtgatatgcttgcttgattttcacatttatgaacaacaacaatttcttaaaaagatgcagctattt 4425773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 33321506 - 33321442
Alignment:
Q  19 gaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||| |||||||||||| ||| ||||||||||| ||||||  ||||||||||||||||| ||||    
T  33321506 gaacatgttcttttcctacagcaaatctttataatgttttggt--atgttttagaaatgtacttata 33321442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 15275852 - 15275886
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatg 54  Q
    ||||||||||||||||||||||| |||||||||||    
T  15275852 aacatgctcttttcctacaacaaatctttataatg 15275886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 10659 - 10590
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  10659 atagaacatgttcttttcctataacaaatctttataatgctttggtaaatgttttagaaatgtacttata 10590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 12980 - 12916
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtac 80  Q
    |||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  12980 atagaacatgttcttttcctacagcaaatctttataatgttttggtaaatgttttagaaatgtac 12916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 100805 - 100867
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgt 78  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||    
T  100805 atagaacatgctcttttcctacagcaaatctttataatgttttggtaaatgttttaaaaatgt 100867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 30047 - 29978
Alignment:
Q  16 atagaacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||||| | ||||||||||  || ||||||||||||||||||||||||||||||||||||| ||||    
T  30047 atagaacatgtttttttcctacaggaaatctttataatgctttggtaaatgttttagaaatgtacttata 29978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 26695 - 26760
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||   || |||||||||||||||| ||||| |||||||||||||||||||    
T  26695 aacatgctcttttcctacggtaaatctttataatgctttgctaaatattttagaaatgtacatata 26760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 49280 - 49215
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||| |||| |||  ||||||||| |||||||||||||||||||||||||||||||    
T  49280 aacatgcttttttcatacagcaaacctttataatactttggtaaatgttttagaaatgtacatata 49215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 26405 - 26340
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||| ||||||||    
T  26405 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatatacatata 26340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 10138 - 10203
Alignment:
Q  20 aacatgctcttttcctacaacaattctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||||| ||||||||||  || |||||| |||||||||||||||||||||||||| ||||||||    
T  10138 aacatgctattttcctacagtaaatctttacaatgctttggtaaatgttttagaaatatacatata 10203  T

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Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 652 - 693
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  652 tctttacaatgctttgataaatgttttagaaatgtacatata 693  T

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Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 120105 - 120146
Alignment:
Q  44 tctttataatgctttggtaaatgttttagaaatgtacatata 85  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  120105 tctttataatgctttggtaaatgttttagaaatatatatata 120146  T

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